Cluster: GasparriniAJ_2019_SRR9865562_bin.4_CGC1
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865562_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168 | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_6 | 6878 | 7708 | - | 3.A.1.132.3 |
| pfam | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168 | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_7 | 7968 | 10847 | + | UvrA_DNA-bind | UvrA_inter |
| pfam | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168 | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_8 | 10981 | 11481 | + | tRNA_edit |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168 | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_9 | 11485 | 13788 | + | 2.A.66.4.4 |
| pfam | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168 | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_10 | 13795 | 15735 | + | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168 | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_11 | 16100 | 17713 | + | 3.A.1.5.27 |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168 | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_12 | 17871 | 18827 | + | 3.A.1.5.38 |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168 | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_13 | 18831 | 20846 | + | 3.A.1.5.25 |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168 | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_14 | 20847 | 21674 | + | 3.A.1.5.27 |
| CAZyme | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168 | GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_15 | 21806 | 22732 | + | CE7 |
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_6
Type: TC
Location: 6878 - 7708 (-)
Type: TC
Location: 6878 - 7708 (-)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_7
Type: pfam
Location: 7968 - 10847 (+)
Type: pfam
Location: 7968 - 10847 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_8
Type: pfam
Location: 10981 - 11481 (+)
Type: pfam
Location: 10981 - 11481 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_9
Type: TC
Location: 11485 - 13788 (+)
Type: TC
Location: 11485 - 13788 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_10
Type: pfam
Location: 13795 - 15735 (+)
Type: pfam
Location: 13795 - 15735 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_11
Type: TC
Location: 16100 - 17713 (+)
Type: TC
Location: 16100 - 17713 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_12
Type: TC
Location: 17871 - 18827 (+)
Type: TC
Location: 17871 - 18827 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_13
Type: TC
Location: 18831 - 20846 (+)
Type: TC
Location: 18831 - 20846 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_14
Type: TC
Location: 20847 - 21674 (+)
Type: TC
Location: 20847 - 21674 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_1168_15
Type: CAZyme
Location: 21806 - 22732 (+)
Type: CAZyme
Location: 21806 - 22732 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.