Cluster: GasparriniAJ_2019_SRR9865555_bin.9_CGC5
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865555_bin.9
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_22 | 24327 | 25496 | - | CE9 |
| STP | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_23 | 25615 | 26781 | - | SIS | SIS |
| TF | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_24 | 26896 | 27627 | - | GntR |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_25 | 27814 | 28896 | - | 4.A.6.1.4 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_26 | 28886 | 29686 | - | 4.A.6.1.4 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_27 | 29777 | 30259 | - | 4.A.6.1.4 |
| pfam | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_28 | 30296 | 30577 | - | YajC |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 | GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_29 | 30577 | 31020 | - | 4.A.6.1.16 |
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_22
Type: CAZyme
Location: 24327 - 25496 (-)
Type: CAZyme
Location: 24327 - 25496 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_23
Type: STP
Location: 25615 - 26781 (-)
Type: STP
Location: 25615 - 26781 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_24
Type: TF
Location: 26896 - 27627 (-)
Type: TF
Location: 26896 - 27627 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_25
Type: TC
Location: 27814 - 28896 (-)
Type: TC
Location: 27814 - 28896 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_26
Type: TC
Location: 28886 - 29686 (-)
Type: TC
Location: 28886 - 29686 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_27
Type: TC
Location: 29777 - 30259 (-)
Type: TC
Location: 29777 - 30259 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_28
Type: pfam
Location: 30296 - 30577 (-)
Type: pfam
Location: 30296 - 30577 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_29
Type: TC
Location: 30577 - 31020 (-)
Type: TC
Location: 30577 - 31020 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_28 | vegan > omnivore | 1.08775 | 0.00701 |