dbCAN Logo

Cluster: GasparriniAJ_2019_SRR9865555_bin.9_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_2 1552 1890 - 4.A.3.1.2
TF GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_3 2105 3109 - LacI
TC GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_4 3466 5235 + 4.A.3.1.1
CAZyme GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_5 5302 6741 + GH1
TF GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_6 7018 8055 - LacI
CAZyme GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_7 8397 9839 + GH1
TC GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_8 10016 11776 + 4.A.3.1.1
TF GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_9 12030 13040 - LacI
TC GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_10 13316 15094 + 4.A.3.1.1
CAZyme GasparriniAJ_2019_SRR9865555_bin.9_k141_12625 GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_11 15171 16592 + GH1
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_2
Type: TC
Location: 1552 - 1890 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_3
Type: TF
Location: 2105 - 3109 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_4
Type: TC
Location: 3466 - 5235 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_5
Type: CAZyme
Location: 5302 - 6741 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_6
Type: TF
Location: 7018 - 8055 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_7
Type: CAZyme
Location: 8397 - 9839 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_8
Type: TC
Location: 10016 - 11776 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_9
Type: TF
Location: 12030 - 13040 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_10
Type: TC
Location: 13316 - 15094 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_11
Type: CAZyme
Location: 15171 - 16592 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
GasparriniAJ_2019_SRR9865555_bin.9_k141_12625_6 vegetarian > omnivore 1.03248 0.02677

🧭 Explore Read Mapping of CGC

← Back to Cluster List