Cluster: GasparriniAJ_2019_SRR9865555_bin.9_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865555_bin.9
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865555_bin.9_k141_9256 | GasparriniAJ_2019_SRR9865555_bin.9_k141_9256_15 | 14568 | 15494 | - | CE7 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_9256 | GasparriniAJ_2019_SRR9865555_bin.9_k141_9256_16 | 15626 | 16453 | - | 3.A.1.5.27 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_9256 | GasparriniAJ_2019_SRR9865555_bin.9_k141_9256_17 | 16454 | 18469 | - | 3.A.1.5.25 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_9256 | GasparriniAJ_2019_SRR9865555_bin.9_k141_9256_18 | 18473 | 19429 | - | 3.A.1.5.38 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_9256 | GasparriniAJ_2019_SRR9865555_bin.9_k141_9256_19 | 19587 | 21200 | - | 3.A.1.5.27 |
| pfam | GasparriniAJ_2019_SRR9865555_bin.9_k141_9256 | GasparriniAJ_2019_SRR9865555_bin.9_k141_9256_20 | 21565 | 23505 | - | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_9256 | GasparriniAJ_2019_SRR9865555_bin.9_k141_9256_21 | 23512 | 25194 | - | 2.A.66.4.4 |
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_9256_15
Type: CAZyme
Location: 14568 - 15494 (-)
Type: CAZyme
Location: 14568 - 15494 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_9256_16
Type: TC
Location: 15626 - 16453 (-)
Type: TC
Location: 15626 - 16453 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_9256_17
Type: TC
Location: 16454 - 18469 (-)
Type: TC
Location: 16454 - 18469 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_9256_18
Type: TC
Location: 18473 - 19429 (-)
Type: TC
Location: 18473 - 19429 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_9256_19
Type: TC
Location: 19587 - 21200 (-)
Type: TC
Location: 19587 - 21200 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_9256_20
Type: pfam
Location: 21565 - 23505 (-)
Type: pfam
Location: 21565 - 23505 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_9256_21
Type: TC
Location: 23512 - 25194 (-)
Type: TC
Location: 23512 - 25194 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.