Cluster: GasparriniAJ_2019_SRR9865555_bin.9_CGC11
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865555_bin.9
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719 | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_6 | 4169 | 5545 | - | GH13_20 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719 | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_7 | 5700 | 6896 | - | 2.A.1.2.18 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719 | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_8 | 7017 | 9377 | - | 9.A.8.1.6 |
| peptidase | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719 | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_9 | 9722 | 10624 | - | S09.UPW |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719 | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_10 | 10868 | 11431 | + | 4.A.1.2.6 |
| pfam | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719 | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_11 | 11613 | 13016 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719 | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_12 | 13275 | 14060 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719 | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_13 | 14221 | 15201 | + | 3.A.1.34.1 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719 | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_14 | 15391 | 16314 | + | 3.A.1.34.1 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719 | GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_15 | 16307 | 17101 | + | 3.A.1.34.1 |
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_6
Type: CAZyme
Location: 4169 - 5545 (-)
Type: CAZyme
Location: 4169 - 5545 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_7
Type: TC
Location: 5700 - 6896 (-)
Type: TC
Location: 5700 - 6896 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_8
Type: TC
Location: 7017 - 9377 (-)
Type: TC
Location: 7017 - 9377 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_9
Type: peptidase
Location: 9722 - 10624 (-)
Type: peptidase
Location: 9722 - 10624 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_10
Type: TC
Location: 10868 - 11431 (+)
Type: TC
Location: 10868 - 11431 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_11
Type: pfam
Location: 11613 - 13016 (+)
Type: pfam
Location: 11613 - 13016 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_12
Type:
Location: 13275 - 14060 (+)
Type:
Location: 13275 - 14060 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_13
Type: TC
Location: 14221 - 15201 (+)
Type: TC
Location: 14221 - 15201 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_14
Type: TC
Location: 15391 - 16314 (+)
Type: TC
Location: 15391 - 16314 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_41719_15
Type: TC
Location: 16307 - 17101 (+)
Type: TC
Location: 16307 - 17101 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.