Cluster: GasparriniAJ_2019_SRR9865555_bin.9_CGC10
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865555_bin.9
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787 | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_3 | 2884 | 4389 | + | GH77 |
| CAZyme | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787 | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_4 | 4518 | 6785 | + | GT35 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787 | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_5 | 7243 | 8442 | - | 3.A.1.1.22 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787 | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_6 | 8511 | 9350 | - | 3.A.1.1.45 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787 | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_7 | 9350 | 10204 | - | 3.A.1.1.45 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787 | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_8 | 10293 | 11609 | - | 3.A.1.1.45 |
| TF | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787 | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_9 | 11921 | 12640 | - | GntR |
| NULL(UNKNOWN) | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787 | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_10 | 12724 | 12843 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787 | GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_11 | 12865 | 15315 | + | 4.A.1.1.8 |
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_3
Type: CAZyme
Location: 2884 - 4389 (+)
Type: CAZyme
Location: 2884 - 4389 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_4
Type: CAZyme
Location: 4518 - 6785 (+)
Type: CAZyme
Location: 4518 - 6785 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_5
Type: TC
Location: 7243 - 8442 (-)
Type: TC
Location: 7243 - 8442 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_6
Type: TC
Location: 8511 - 9350 (-)
Type: TC
Location: 8511 - 9350 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_7
Type: TC
Location: 9350 - 10204 (-)
Type: TC
Location: 9350 - 10204 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_8
Type: TC
Location: 10293 - 11609 (-)
Type: TC
Location: 10293 - 11609 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_9
Type: TF
Location: 11921 - 12640 (-)
Type: TF
Location: 11921 - 12640 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_10
Type:
Location: 12724 - 12843 (-)
Type:
Location: 12724 - 12843 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_32787_11
Type: TC
Location: 12865 - 15315 (+)
Type: TC
Location: 12865 - 15315 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.