Cluster: GasparriniAJ_2019_SRR9865555_bin.9_CGC1
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865555_bin.9
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650 | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_8 | 6864 | 8189 | + | GH4 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650 | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_9 | 8272 | 9834 | + | 4.A.1.1.3 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650 | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_10 | 10062 | 11315 | - | 2.A.1.2.25 |
| NULL(UNKNOWN) | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650 | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_11 | 11576 | 12445 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650 | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_12 | 12559 | 13452 | + | Aldose_epim |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650 | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_13 | 13715 | 14641 | + | 3.A.1.3.20 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650 | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_14 | 14651 | 15799 | + | 3.A.1.3.20 |
| TC | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650 | GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_15 | 15822 | 16607 | + | 3.A.1.3.20 |
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_8
Type: CAZyme
Location: 6864 - 8189 (+)
Type: CAZyme
Location: 6864 - 8189 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_9
Type: TC
Location: 8272 - 9834 (+)
Type: TC
Location: 8272 - 9834 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_10
Type: TC
Location: 10062 - 11315 (-)
Type: TC
Location: 10062 - 11315 (-)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_11
Type:
Location: 11576 - 12445 (+)
Type:
Location: 11576 - 12445 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_12
Type: pfam
Location: 12559 - 13452 (+)
Type: pfam
Location: 12559 - 13452 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_13
Type: TC
Location: 13715 - 14641 (+)
Type: TC
Location: 13715 - 14641 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_14
Type: TC
Location: 14651 - 15799 (+)
Type: TC
Location: 14651 - 15799 (+)
Gene ID: GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_15
Type: TC
Location: 15822 - 16607 (+)
Type: TC
Location: 15822 - 16607 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865555_bin.9_k141_3650_15 | vegetarian > vegan | 1.21177 | 0.00364 |