Cluster: GasparriniAJ_2019_SRR9865541_bin.10_CGC8
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865541_bin.10
- CGC Family ID: CGCFAM_05452
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167 | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_1 | 2 | 556 | + | CE4 |
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167 | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_2 | 606 | 2084 | - | 9.B.174.1.1 |
| pfam | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167 | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_3 | 2114 | 2947 | - | Amidase_3 |
| pfam | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167 | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_4 | 3058 | 4023 | - | Ldh_1_N | Ldh_1_C |
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167 | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_5 | 4123 | 4944 | - | 2.A.119.2.1 |
| NULL(UNKNOWN) | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167 | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_6 | 5069 | 5308 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167 | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_7 | 5437 | 11928 | - | CBM32 | CBM32 | GH31_18 |
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167 | GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_8 | 13641 | 18863 | - | CBM32 | GH36 |
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_1
Type: CAZyme
Location: 2 - 556 (+)
Type: CAZyme
Location: 2 - 556 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_2
Type: TC
Location: 606 - 2084 (-)
Type: TC
Location: 606 - 2084 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_3
Type: pfam
Location: 2114 - 2947 (-)
Type: pfam
Location: 2114 - 2947 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_4
Type: pfam
Location: 3058 - 4023 (-)
Type: pfam
Location: 3058 - 4023 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_5
Type: TC
Location: 4123 - 4944 (-)
Type: TC
Location: 4123 - 4944 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_6
Type:
Location: 5069 - 5308 (-)
Type:
Location: 5069 - 5308 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_7
Type: CAZyme
Location: 5437 - 11928 (-)
Type: CAZyme
Location: 5437 - 11928 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_13167_8
Type: CAZyme
Location: 13641 - 18863 (-)
Type: CAZyme
Location: 13641 - 18863 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia spiroformis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.