Cluster: GasparriniAJ_2019_SRR9865541_bin.10_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865541_bin.10
- CGC Family ID: CGCFAM_02068
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_12270 | GasparriniAJ_2019_SRR9865541_bin.10_k141_12270_1 | 1 | 4644 | - | GH84 |
| pfam | GasparriniAJ_2019_SRR9865541_bin.10_k141_12270 | GasparriniAJ_2019_SRR9865541_bin.10_k141_12270_2 | 5029 | 5862 | - | PRD | PRD | CAT_RBD |
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_12270 | GasparriniAJ_2019_SRR9865541_bin.10_k141_12270_3 | 6512 | 7969 | - | 4.A.1.1.2 |
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_12270 | GasparriniAJ_2019_SRR9865541_bin.10_k141_12270_4 | 8188 | 8673 | + | 4.A.1.1.14 |
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_12270_1
Type: CAZyme
Location: 1 - 4644 (-)
Type: CAZyme
Location: 1 - 4644 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_12270_2
Type: pfam
Location: 5029 - 5862 (-)
Type: pfam
Location: 5029 - 5862 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_12270_3
Type: TC
Location: 6512 - 7969 (-)
Type: TC
Location: 6512 - 7969 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_12270_4
Type: TC
Location: 8188 - 8673 (+)
Type: TC
Location: 8188 - 8673 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia spiroformis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.