Cluster: GasparriniAJ_2019_SRR9865541_bin.10_CGC5
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865541_bin.10
- CGC Family ID: CGCFAM_04298
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386 | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_5 | 2789 | 3400 | + | 9.B.18.1.3 |
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386 | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_6 | 3400 | 4599 | + | GT4 |
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386 | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_7 | 4596 | 5639 | + | 9.B.18.2.1 |
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386 | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_8 | 5639 | 6790 | + | GT4 |
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386 | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_9 | 6957 | 8105 | + | GT5 |
| pfam | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386 | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_10 | 8121 | 9530 | + | O-ag_pol_Wzy |
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386 | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_11 | 9523 | 10959 | + | 2.A.66.2.16 |
| pfam | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386 | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_12 | 10944 | 11708 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386 | GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_13 | 11765 | 13048 | + | GT4 |
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_5
Type: TC
Location: 2789 - 3400 (+)
Type: TC
Location: 2789 - 3400 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_6
Type: CAZyme
Location: 3400 - 4599 (+)
Type: CAZyme
Location: 3400 - 4599 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_7
Type: TC
Location: 4596 - 5639 (+)
Type: TC
Location: 4596 - 5639 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_8
Type: CAZyme
Location: 5639 - 6790 (+)
Type: CAZyme
Location: 5639 - 6790 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_9
Type: CAZyme
Location: 6957 - 8105 (+)
Type: CAZyme
Location: 6957 - 8105 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_10
Type: pfam
Location: 8121 - 9530 (+)
Type: pfam
Location: 8121 - 9530 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_11
Type: TC
Location: 9523 - 10959 (+)
Type: TC
Location: 9523 - 10959 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_12
Type: pfam
Location: 10944 - 11708 (+)
Type: pfam
Location: 10944 - 11708 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_9386_13
Type: CAZyme
Location: 11765 - 13048 (+)
Type: CAZyme
Location: 11765 - 13048 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia spiroformis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.