Cluster: GasparriniAJ_2019_SRR9865541_bin.10_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865541_bin.10
- CGC Family ID: CGCFAM_00003
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_1448 | GasparriniAJ_2019_SRR9865541_bin.10_k141_1448_8 | 5679 | 6290 | + | 9.B.18.1.3 |
| pfam | GasparriniAJ_2019_SRR9865541_bin.10_k141_1448 | GasparriniAJ_2019_SRR9865541_bin.10_k141_1448_9 | 6290 | 7171 | + | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 |
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_1448 | GasparriniAJ_2019_SRR9865541_bin.10_k141_1448_10 | 7173 | 8369 | + | GT4 |
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_1448 | GasparriniAJ_2019_SRR9865541_bin.10_k141_1448_11 | 8565 | 9326 | + | GT32 |
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_1448_8
Type: TC
Location: 5679 - 6290 (+)
Type: TC
Location: 5679 - 6290 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_1448_9
Type: pfam
Location: 6290 - 7171 (+)
Type: pfam
Location: 6290 - 7171 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_1448_10
Type: CAZyme
Location: 7173 - 8369 (+)
Type: CAZyme
Location: 7173 - 8369 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_1448_11
Type: CAZyme
Location: 8565 - 9326 (+)
Type: CAZyme
Location: 8565 - 9326 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia spiroformis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.