Cluster: GasparriniAJ_2019_SRR9865541_bin.10_CGC17
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865541_bin.10
- CGC Family ID: CGCFAM_00002
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219 | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_70 | 66641 | 67255 | + | 9.B.18.1.2 |
| pfam | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219 | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_71 | 67245 | 67862 | + | PglD_N |
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219 | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_72 | 67862 | 68941 | + | GT4 |
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219 | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_73 | 68938 | 69978 | + | GT4 |
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219 | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_74 | 69995 | 71086 | + | GT4 |
| pfam | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219 | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_75 | 71091 | 72404 | + | Wzy_C |
| pfam | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219 | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_76 | 72565 | 73581 | + | PS_pyruv_trans |
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219 | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_77 | 73591 | 74484 | + | GT8 |
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219 | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_78 | 74477 | 75448 | + | GT2 |
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219 | GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_79 | 75530 | 77047 | + | 2.A.66.1.40 |
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_70
Type: TC
Location: 66641 - 67255 (+)
Type: TC
Location: 66641 - 67255 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_71
Type: pfam
Location: 67245 - 67862 (+)
Type: pfam
Location: 67245 - 67862 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_72
Type: CAZyme
Location: 67862 - 68941 (+)
Type: CAZyme
Location: 67862 - 68941 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_73
Type: CAZyme
Location: 68938 - 69978 (+)
Type: CAZyme
Location: 68938 - 69978 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_74
Type: CAZyme
Location: 69995 - 71086 (+)
Type: CAZyme
Location: 69995 - 71086 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_75
Type: pfam
Location: 71091 - 72404 (+)
Type: pfam
Location: 71091 - 72404 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_76
Type: pfam
Location: 72565 - 73581 (+)
Type: pfam
Location: 72565 - 73581 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_77
Type: CAZyme
Location: 73591 - 74484 (+)
Type: CAZyme
Location: 73591 - 74484 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_78
Type: CAZyme
Location: 74477 - 75448 (+)
Type: CAZyme
Location: 74477 - 75448 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_28219_79
Type: TC
Location: 75530 - 77047 (+)
Type: TC
Location: 75530 - 77047 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia spiroformis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.