Cluster: GasparriniAJ_2019_SRR9865541_bin.10_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865541_bin.10
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_1110 | GasparriniAJ_2019_SRR9865541_bin.10_k141_1110_8 | 7184 | 8005 | + | 3.A.1.104.1 |
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_1110 | GasparriniAJ_2019_SRR9865541_bin.10_k141_1110_9 | 8015 | 8842 | + | 3.A.1.104.2 |
| pfam | GasparriniAJ_2019_SRR9865541_bin.10_k141_1110 | GasparriniAJ_2019_SRR9865541_bin.10_k141_1110_10 | 8852 | 9238 | + | CTP_transf_like |
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_1110 | GasparriniAJ_2019_SRR9865541_bin.10_k141_1110_11 | 9239 | 11455 | + | GT2 |
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_1110_8
Type: TC
Location: 7184 - 8005 (+)
Type: TC
Location: 7184 - 8005 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_1110_9
Type: TC
Location: 8015 - 8842 (+)
Type: TC
Location: 8015 - 8842 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_1110_10
Type: pfam
Location: 8852 - 9238 (+)
Type: pfam
Location: 8852 - 9238 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_1110_11
Type: CAZyme
Location: 9239 - 11455 (+)
Type: CAZyme
Location: 9239 - 11455 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia spiroformis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865541_bin.10_k141_1110_8 | vegan > omnivore | 4.87910 | 0.00358 |
| GasparriniAJ_2019_SRR9865541_bin.10_k141_1110_9 | vegan > omnivore | 3.06667 | 0.00358 |