Cluster: GH116_40_sub_CGC6
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: GH116_40_sub
- CGC Family ID: CGCFAM_01141
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_86533 | k141_86533_2 | 1635 | 3569 | - | 9.B.97.5.1 |
| TC | k141_86533 | k141_86533_3 | 3807 | 4370 | - | 4.A.1.2.6 |
| peptidase | k141_86533 | k141_86533_4 | 4614 | 5516 | + | S09.UPW |
| TC | k141_86533 | k141_86533_5 | 5862 | 8222 | + | 9.A.8.1.6 |
| TC | k141_86533 | k141_86533_6 | 8537 | 10201 | + | 4.A.1.1.3 |
| TF | k141_86533 | k141_86533_7 | 10264 | 11016 | - | HTH_6 |
| CAZyme | k141_86533 | k141_86533_8 | 11191 | 12564 | + | GH4 |
| NULL(UNKNOWN) | k141_86533 | k141_86533_9 | 12730 | 13482 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_86533 | k141_86533_10 | 13657 | 14853 | + | 2.A.1.2.18 |
Gene ID: k141_86533_2
Type: TC
Location: 1635 - 3569 (-)
Type: TC
Location: 1635 - 3569 (-)
Gene ID: k141_86533_3
Type: TC
Location: 3807 - 4370 (-)
Type: TC
Location: 3807 - 4370 (-)
Gene ID: k141_86533_4
Type: peptidase
Location: 4614 - 5516 (+)
Type: peptidase
Location: 4614 - 5516 (+)
Gene ID: k141_86533_5
Type: TC
Location: 5862 - 8222 (+)
Type: TC
Location: 5862 - 8222 (+)
Gene ID: k141_86533_6
Type: TC
Location: 8537 - 10201 (+)
Type: TC
Location: 8537 - 10201 (+)
Gene ID: k141_86533_7
Type: TF
Location: 10264 - 11016 (-)
Type: TF
Location: 10264 - 11016 (-)
Gene ID: k141_86533_8
Type: CAZyme
Location: 11191 - 12564 (+)
Type: CAZyme
Location: 11191 - 12564 (+)
Gene ID: k141_86533_9
Type:
Location: 12730 - 13482 (+)
Type:
Location: 12730 - 13482 (+)
Gene ID: k141_86533_10
Type: TC
Location: 13657 - 14853 (+)
Type: TC
Location: 13657 - 14853 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_86533_2 | vegan > omnivore | 1.57609 | 0.00364 |
| k141_86533_6 | vegan > omnivore | 1.10623 | 0.00364 |
| k141_86533_8 | vegan > omnivore | 1.67069 | 0.00364 |
| k141_86533_9 | vegan > omnivore | 1.90867 | 0.00364 |