Cluster: GH116_40_sub_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: GH116_40_sub
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_239166 | k141_239166_37 | 40121 | 40657 | - | 4.A.1.2.6 |
| CAZyme | k141_239166 | k141_239166_38 | 40926 | 42374 | - | GH1 |
| TF | k141_239166 | k141_239166_39 | 42547 | 43554 | - | HTH_AraC |
| CAZyme | k141_239166 | k141_239166_40 | 43671 | 46277 | + | GH106 |
| TF | k141_239166 | k141_239166_41 | 46320 | 47174 | + | HTH_6 |
| STP | k141_239166 | k141_239166_42 | 47527 | 48210 | - | Pribosyltran |
| TC | k141_239166 | k141_239166_43 | 48647 | 51415 | + | 3.A.3.4.1 |
Gene ID: k141_239166_37
Type: TC
Location: 40121 - 40657 (-)
Type: TC
Location: 40121 - 40657 (-)
Gene ID: k141_239166_38
Type: CAZyme
Location: 40926 - 42374 (-)
Type: CAZyme
Location: 40926 - 42374 (-)
Gene ID: k141_239166_39
Type: TF
Location: 42547 - 43554 (-)
Type: TF
Location: 42547 - 43554 (-)
Gene ID: k141_239166_40
Type: CAZyme
Location: 43671 - 46277 (+)
Type: CAZyme
Location: 43671 - 46277 (+)
Gene ID: k141_239166_41
Type: TF
Location: 46320 - 47174 (+)
Type: TF
Location: 46320 - 47174 (+)
Gene ID: k141_239166_42
Type: STP
Location: 47527 - 48210 (-)
Type: STP
Location: 47527 - 48210 (-)
Gene ID: k141_239166_43
Type: TC
Location: 48647 - 51415 (+)
Type: TC
Location: 48647 - 51415 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.