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Cluster: GH102_22_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_270987 k141_270987_3 1501 3036 - GH28
TC k141_270987 k141_270987_4 3059 3982 - 3.A.1.1.11
TC k141_270987 k141_270987_5 3986 4864 - 3.A.1.1.11
CAZyme k141_270987 k141_270987_6 4854 5990 - GH105
TF k141_270987 k141_270987_7 6169 6858 + GntR
pfam k141_270987 k141_270987_8 6876 8207 - MatE | MatE
TC k141_270987 k141_270987_9 8445 9716 + 3.A.1.1.11
TC k141_270987 k141_270987_10 9738 11030 + 3.A.1.1.11
pfam k141_270987 k141_270987_11 11047 11886 + AP_endonuc_2
TC k141_270987 k141_270987_12 11927 13048 + 3.A.1.1.6
TC k141_270987 k141_270987_13 13075 14052 + 1.B.21.2.1
NULL(UNKNOWN) k141_270987 k141_270987_14 14212 14436 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme k141_270987 k141_270987_15 14485 18408 - CBM51 | GH2
TF k141_270987 k141_270987_16 18654 19085 + MarR
TC k141_270987 k141_270987_17 19174 20511 + 2.A.66.1.26
Gene ID: k141_270987_3
Type: CAZyme
Location: 1501 - 3036 (-)
Gene ID: k141_270987_4
Type: TC
Location: 3059 - 3982 (-)
Gene ID: k141_270987_5
Type: TC
Location: 3986 - 4864 (-)
Gene ID: k141_270987_6
Type: CAZyme
Location: 4854 - 5990 (-)
Gene ID: k141_270987_7
Type: TF
Location: 6169 - 6858 (+)
Gene ID: k141_270987_8
Type: pfam
Location: 6876 - 8207 (-)
Gene ID: k141_270987_9
Type: TC
Location: 8445 - 9716 (+)
Gene ID: k141_270987_10
Type: TC
Location: 9738 - 11030 (+)
Gene ID: k141_270987_11
Type: pfam
Location: 11047 - 11886 (+)
Gene ID: k141_270987_12
Type: TC
Location: 11927 - 13048 (+)
Gene ID: k141_270987_13
Type: TC
Location: 13075 - 14052 (+)
Gene ID: k141_270987_14
Type:
Location: 14212 - 14436 (+)
Gene ID: k141_270987_15
Type: CAZyme
Location: 14485 - 18408 (-)
Gene ID: k141_270987_16
Type: TF
Location: 18654 - 19085 (+)
Gene ID: k141_270987_17
Type: TC
Location: 19174 - 20511 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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