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Cluster: GH030_bin.25_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_426252 k141_426252_2 1468 3756 - GH3
TF k141_426252 k141_426252_3 3965 4783 + HTH_AraC
TF k141_426252 k141_426252_4 4714 5622 - HTH_AraC | HTH_AraC
CAZyme k141_426252 k141_426252_5 5670 7820 - GH3
CAZyme k141_426252 k141_426252_6 7903 9048 - GH8
TC k141_426252 k141_426252_7 9158 10057 - 3.A.1.1.29
TC k141_426252 k141_426252_8 10078 11034 - 3.A.1.1.29
TC k141_426252 k141_426252_9 11111 12817 - 3.A.1.1.29
TF k141_426252 k141_426252_10 12957 14552 - HTH_AraC | HTH_AraC
TC k141_426252 k141_426252_11 14578 16383 - 8.A.59.2.1
CAZyme k141_426252 k141_426252_12 16458 18017 - CBM91 | GH43_12
CAZyme k141_426252 k141_426252_13 18038 19771 - CE17
CAZyme k141_426252 k141_426252_14 19902 21881 - CE1
Gene ID: k141_426252_2
Type: CAZyme
Location: 1468 - 3756 (-)
Gene ID: k141_426252_3
Type: TF
Location: 3965 - 4783 (+)
Gene ID: k141_426252_4
Type: TF
Location: 4714 - 5622 (-)
Gene ID: k141_426252_5
Type: CAZyme
Location: 5670 - 7820 (-)
Gene ID: k141_426252_6
Type: CAZyme
Location: 7903 - 9048 (-)
Gene ID: k141_426252_7
Type: TC
Location: 9158 - 10057 (-)
Gene ID: k141_426252_8
Type: TC
Location: 10078 - 11034 (-)
Gene ID: k141_426252_9
Type: TC
Location: 11111 - 12817 (-)
Gene ID: k141_426252_10
Type: TF
Location: 12957 - 14552 (-)
Gene ID: k141_426252_11
Type: TC
Location: 14578 - 16383 (-)
Gene ID: k141_426252_12
Type: CAZyme
Location: 16458 - 18017 (-)
Gene ID: k141_426252_13
Type: CAZyme
Location: 18038 - 19771 (-)
Gene ID: k141_426252_14
Type: CAZyme
Location: 19902 - 21881 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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