Cluster: GH003_bin.24_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: GH003_bin.24
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_75916 | k141_75916_7 | 4280 | 5449 | - | CE9 |
| STP | k141_75916 | k141_75916_8 | 5568 | 6734 | - | SIS | SIS |
| TF | k141_75916 | k141_75916_9 | 6849 | 7580 | - | GntR |
| TC | k141_75916 | k141_75916_10 | 7766 | 8848 | - | 4.A.6.1.4 |
| TC | k141_75916 | k141_75916_11 | 8838 | 9638 | - | 4.A.6.1.4 |
| TC | k141_75916 | k141_75916_12 | 9729 | 10211 | - | 4.A.6.1.4 |
| pfam | k141_75916 | k141_75916_13 | 10248 | 10529 | - | YajC |
| TC | k141_75916 | k141_75916_14 | 10529 | 10972 | - | 4.A.6.1.16 |
Gene ID: k141_75916_7
Type: CAZyme
Location: 4280 - 5449 (-)
Type: CAZyme
Location: 4280 - 5449 (-)
Gene ID: k141_75916_8
Type: STP
Location: 5568 - 6734 (-)
Type: STP
Location: 5568 - 6734 (-)
Gene ID: k141_75916_9
Type: TF
Location: 6849 - 7580 (-)
Type: TF
Location: 6849 - 7580 (-)
Gene ID: k141_75916_10
Type: TC
Location: 7766 - 8848 (-)
Type: TC
Location: 7766 - 8848 (-)
Gene ID: k141_75916_11
Type: TC
Location: 8838 - 9638 (-)
Type: TC
Location: 8838 - 9638 (-)
Gene ID: k141_75916_12
Type: TC
Location: 9729 - 10211 (-)
Type: TC
Location: 9729 - 10211 (-)
Gene ID: k141_75916_13
Type: pfam
Location: 10248 - 10529 (-)
Type: pfam
Location: 10248 - 10529 (-)
Gene ID: k141_75916_14
Type: TC
Location: 10529 - 10972 (-)
Type: TC
Location: 10529 - 10972 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_75916_13 | vegan > omnivore | 1.10190 | 0.00863 |