Cluster: GH003_bin.24_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: GH003_bin.24
- CGC Family ID: CGCFAM_00014
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_107203 | k141_107203_5 | 2901 | 4322 | - | GH1 |
| TC | k141_107203 | k141_107203_6 | 4398 | 6176 | - | 4.A.3.1.1 |
| TF | k141_107203 | k141_107203_7 | 6452 | 7462 | + | LacI |
| TC | k141_107203 | k141_107203_8 | 7796 | 9556 | - | 4.A.3.1.1 |
| CAZyme | k141_107203 | k141_107203_9 | 9732 | 11174 | - | GH1 |
| TF | k141_107203 | k141_107203_10 | 11516 | 12553 | + | LacI |
| CAZyme | k141_107203 | k141_107203_11 | 12821 | 13939 | - | GH1 |
Gene ID: k141_107203_5
Type: CAZyme
Location: 2901 - 4322 (-)
Type: CAZyme
Location: 2901 - 4322 (-)
Gene ID: k141_107203_6
Type: TC
Location: 4398 - 6176 (-)
Type: TC
Location: 4398 - 6176 (-)
Gene ID: k141_107203_7
Type: TF
Location: 6452 - 7462 (+)
Type: TF
Location: 6452 - 7462 (+)
Gene ID: k141_107203_8
Type: TC
Location: 7796 - 9556 (-)
Type: TC
Location: 7796 - 9556 (-)
Gene ID: k141_107203_9
Type: CAZyme
Location: 9732 - 11174 (-)
Type: CAZyme
Location: 9732 - 11174 (-)
Gene ID: k141_107203_10
Type: TF
Location: 11516 - 12553 (+)
Type: TF
Location: 11516 - 12553 (+)
Gene ID: k141_107203_11
Type: CAZyme
Location: 12821 - 13939 (-)
Type: CAZyme
Location: 12821 - 13939 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_107203_10 | vegetarian > omnivore | 1.13730 | 0.02242 |