Cluster: GCF_021624045.1_ASM2162404v1_genomic_CGC56
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: GCF_021624045.1_ASM2162404v1_genomic
- CGC Family ID: CGCFAM_03305
- Continent: Africa
- Source Study: Tamburini et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | NZ_JAJWHX010000105.1 | NZ_JAJWHX010000105.1_2 | 445 | 1914 | + | 2.A.53.3.8 |
| pfam | NZ_JAJWHX010000105.1 | NZ_JAJWHX010000105.1_3 | 2026 | 3045 | + | ADH_zinc_N | AlaDh_PNT_C | ADH_N | ADH_zinc_N_2 |
| TC | NZ_JAJWHX010000105.1 | NZ_JAJWHX010000105.1_4 | 3188 | 4060 | + | 3.A.1.1.11 |
| TC | NZ_JAJWHX010000105.1 | NZ_JAJWHX010000105.1_5 | 4050 | 4937 | + | 3.A.1.1.18 |
| pfam | NZ_JAJWHX010000105.1 | NZ_JAJWHX010000105.1_6 | 4948 | 5772 | + | Metallophos | Metallophos_2 |
| TC | NZ_JAJWHX010000105.1 | NZ_JAJWHX010000105.1_7 | 5778 | 6851 | + | 3.A.1.1.3 |
| TC | NZ_JAJWHX010000105.1 | NZ_JAJWHX010000105.1_8 | 6844 | 8154 | + | 3.A.1.1.7 |
| pfam | NZ_JAJWHX010000105.1 | NZ_JAJWHX010000105.1_9 | 8425 | 9324 | - | AP_endonuc_2 |
| pfam | NZ_JAJWHX010000105.1 | NZ_JAJWHX010000105.1_10 | 9348 | 10232 | - | AP_endonuc_2 |
| CAZyme | NZ_JAJWHX010000105.1 | NZ_JAJWHX010000105.1_11 | 10274 | 11287 | - | GH177 |
Gene ID: NZ_JAJWHX010000105.1_2
Type: TC
Location: 445 - 1914 (+)
Type: TC
Location: 445 - 1914 (+)
Gene ID: NZ_JAJWHX010000105.1_3
Type: pfam
Location: 2026 - 3045 (+)
Type: pfam
Location: 2026 - 3045 (+)
Gene ID: NZ_JAJWHX010000105.1_4
Type: TC
Location: 3188 - 4060 (+)
Type: TC
Location: 3188 - 4060 (+)
Gene ID: NZ_JAJWHX010000105.1_5
Type: TC
Location: 4050 - 4937 (+)
Type: TC
Location: 4050 - 4937 (+)
Gene ID: NZ_JAJWHX010000105.1_6
Type: pfam
Location: 4948 - 5772 (+)
Type: pfam
Location: 4948 - 5772 (+)
Gene ID: NZ_JAJWHX010000105.1_7
Type: TC
Location: 5778 - 6851 (+)
Type: TC
Location: 5778 - 6851 (+)
Gene ID: NZ_JAJWHX010000105.1_8
Type: TC
Location: 6844 - 8154 (+)
Type: TC
Location: 6844 - 8154 (+)
Gene ID: NZ_JAJWHX010000105.1_9
Type: pfam
Location: 8425 - 9324 (-)
Type: pfam
Location: 8425 - 9324 (-)
Gene ID: NZ_JAJWHX010000105.1_10
Type: pfam
Location: 9348 - 10232 (-)
Type: pfam
Location: 9348 - 10232 (-)
Gene ID: NZ_JAJWHX010000105.1_11
Type: CAZyme
Location: 10274 - 11287 (-)
Type: CAZyme
Location: 10274 - 11287 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Klebsiella
Species
Klebsiella quasivariicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| NZ_JAJWHX010000105.1_9 | vegetarian > omnivore | 2.15840 | 0.02460 |
| NZ_JAJWHX010000105.1_9 | vegetarian > vegan | 2.43642 | 0.01684 |
| NZ_JAJWHX010000105.1_10 | vegan > omnivore | 1.88994 | 0.02910 |
| NZ_JAJWHX010000105.1_10 | vegetarian > omnivore | 2.50588 | 0.02460 |