Cluster: GCF_021624045.1_ASM2162404v1_genomic_CGC50
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: GCF_021624045.1_ASM2162404v1_genomic
- Continent: Africa
- Source Study: Tamburini et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | NZ_JAJWHX010000015.1 | NZ_JAJWHX010000015.1_28 | 26170 | 26517 | - | 9.B.51.1.1 |
| CAZyme | NZ_JAJWHX010000015.1 | NZ_JAJWHX010000015.1_29 | 26619 | 27941 | - | GH4 |
| TC | NZ_JAJWHX010000015.1 | NZ_JAJWHX010000015.1_30 | 27938 | 29560 | - | 4.A.1.1.10 |
| TF | NZ_JAJWHX010000015.1 | NZ_JAJWHX010000015.1_31 | 29858 | 30604 | + | GntR |
| TC | NZ_JAJWHX010000015.1 | NZ_JAJWHX010000015.1_32 | 30572 | 32233 | - | 2.A.81.1.5 |
Gene ID: NZ_JAJWHX010000015.1_28
Type: TC
Location: 26170 - 26517 (-)
Type: TC
Location: 26170 - 26517 (-)
Gene ID: NZ_JAJWHX010000015.1_29
Type: CAZyme
Location: 26619 - 27941 (-)
Type: CAZyme
Location: 26619 - 27941 (-)
Gene ID: NZ_JAJWHX010000015.1_30
Type: TC
Location: 27938 - 29560 (-)
Type: TC
Location: 27938 - 29560 (-)
Gene ID: NZ_JAJWHX010000015.1_31
Type: TF
Location: 29858 - 30604 (+)
Type: TF
Location: 29858 - 30604 (+)
Gene ID: NZ_JAJWHX010000015.1_32
Type: TC
Location: 30572 - 32233 (-)
Type: TC
Location: 30572 - 32233 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Klebsiella
Species
Klebsiella quasivariicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| NZ_JAJWHX010000015.1_28 | vegetarian > omnivore | 1.84533 | 0.02460 |
| NZ_JAJWHX010000015.1_29 | vegan > omnivore | 1.61145 | 0.00551 |