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Cluster: GCF_021624045.1_ASM2162404v1_genomic_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC NZ_JAJWHX010000009.1 NZ_JAJWHX010000009.1_11 9284 11494 + 3.A.3.6.2
pfam NZ_JAJWHX010000009.1 NZ_JAJWHX010000009.1_12 11685 11930 - TusA
TC NZ_JAJWHX010000009.1 NZ_JAJWHX010000009.1_13 12137 12802 + 2.A.88.8.6
pfam NZ_JAJWHX010000009.1 NZ_JAJWHX010000009.1_14 12876 13433 + DcrB
TC NZ_JAJWHX010000009.1 NZ_JAJWHX010000009.1_15 13434 14654 - 2.A.1.46.7
TC NZ_JAJWHX010000009.1 NZ_JAJWHX010000009.1_16 14789 15838 + 2.A.86.1.2
TC NZ_JAJWHX010000009.1 NZ_JAJWHX010000009.1_17 15835 16215 - 2.A.7.22.1
TC NZ_JAJWHX010000009.1 NZ_JAJWHX010000009.1_18 16215 16553 - 2.A.7.22.2
CAZyme NZ_JAJWHX010000009.1 NZ_JAJWHX010000009.1_19 16550 18205 - GT83
pfam NZ_JAJWHX010000009.1 NZ_JAJWHX010000009.1_20 18205 19107 - Polysacc_deac_1
pfam NZ_JAJWHX010000009.1 NZ_JAJWHX010000009.1_21 19104 21089 - Formyl_trans_N | 3Beta_HSD | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
CAZyme NZ_JAJWHX010000009.1 NZ_JAJWHX010000009.1_22 21086 22069 - GT2
Gene ID: NZ_JAJWHX010000009.1_11
Type: TC
Location: 9284 - 11494 (+)
Gene ID: NZ_JAJWHX010000009.1_12
Type: pfam
Location: 11685 - 11930 (-)
Gene ID: NZ_JAJWHX010000009.1_13
Type: TC
Location: 12137 - 12802 (+)
Gene ID: NZ_JAJWHX010000009.1_14
Type: pfam
Location: 12876 - 13433 (+)
Gene ID: NZ_JAJWHX010000009.1_15
Type: TC
Location: 13434 - 14654 (-)
Gene ID: NZ_JAJWHX010000009.1_16
Type: TC
Location: 14789 - 15838 (+)
Gene ID: NZ_JAJWHX010000009.1_17
Type: TC
Location: 15835 - 16215 (-)
Gene ID: NZ_JAJWHX010000009.1_18
Type: TC
Location: 16215 - 16553 (-)
Gene ID: NZ_JAJWHX010000009.1_19
Type: CAZyme
Location: 16550 - 18205 (-)
Gene ID: NZ_JAJWHX010000009.1_20
Type: pfam
Location: 18205 - 19107 (-)
Gene ID: NZ_JAJWHX010000009.1_21
Type: pfam
Location: 19104 - 21089 (-)
Gene ID: NZ_JAJWHX010000009.1_22
Type: CAZyme
Location: 21086 - 22069 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
NZ_JAJWHX010000009.1_11 vegan > omnivore 1.06120 0.01958

🧭 Explore Read Mapping of CGC

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