Cluster: GCF_021624045.1_ASM2162404v1_genomic_CGC33
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: GCF_021624045.1_ASM2162404v1_genomic
- Continent: Africa
- Source Study: Tamburini et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | NZ_JAJWHX010000006.1 | NZ_JAJWHX010000006.1_63 | 75848 | 77053 | - | 3.A.15.2.1 |
| TC | NZ_JAJWHX010000006.1 | NZ_JAJWHX010000006.1_64 | 77043 | 78428 | - | 3.A.15.2.1 |
| TC | NZ_JAJWHX010000006.1 | NZ_JAJWHX010000006.1_65 | 78439 | 78870 | - | 3.A.15.2.1 |
| pfam | NZ_JAJWHX010000006.1 | NZ_JAJWHX010000006.1_66 | 79052 | 79945 | - | QRPTase_C | QRPTase_N |
| pfam | NZ_JAJWHX010000006.1 | NZ_JAJWHX010000006.1_67 | 80079 | 80642 | + | Amidase_2 |
| TC | NZ_JAJWHX010000006.1 | NZ_JAJWHX010000006.1_68 | 80639 | 81493 | + | 9.B.125.1.1 |
| CAZyme | NZ_JAJWHX010000006.1 | NZ_JAJWHX010000006.1_69 | 81715 | 82665 | - | GH43_26 |
| TC | NZ_JAJWHX010000006.1 | NZ_JAJWHX010000006.1_70 | 82665 | 84071 | - | 2.A.2.3.4 |
| TC | NZ_JAJWHX010000006.1 | NZ_JAJWHX010000006.1_71 | 84255 | 85625 | - | 2.A.3.1.3 |
Gene ID: NZ_JAJWHX010000006.1_63
Type: TC
Location: 75848 - 77053 (-)
Type: TC
Location: 75848 - 77053 (-)
Gene ID: NZ_JAJWHX010000006.1_64
Type: TC
Location: 77043 - 78428 (-)
Type: TC
Location: 77043 - 78428 (-)
Gene ID: NZ_JAJWHX010000006.1_65
Type: TC
Location: 78439 - 78870 (-)
Type: TC
Location: 78439 - 78870 (-)
Gene ID: NZ_JAJWHX010000006.1_66
Type: pfam
Location: 79052 - 79945 (-)
Type: pfam
Location: 79052 - 79945 (-)
Gene ID: NZ_JAJWHX010000006.1_67
Type: pfam
Location: 80079 - 80642 (+)
Type: pfam
Location: 80079 - 80642 (+)
Gene ID: NZ_JAJWHX010000006.1_68
Type: TC
Location: 80639 - 81493 (+)
Type: TC
Location: 80639 - 81493 (+)
Gene ID: NZ_JAJWHX010000006.1_69
Type: CAZyme
Location: 81715 - 82665 (-)
Type: CAZyme
Location: 81715 - 82665 (-)
Gene ID: NZ_JAJWHX010000006.1_70
Type: TC
Location: 82665 - 84071 (-)
Type: TC
Location: 82665 - 84071 (-)
Gene ID: NZ_JAJWHX010000006.1_71
Type: TC
Location: 84255 - 85625 (-)
Type: TC
Location: 84255 - 85625 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Klebsiella
Species
Klebsiella quasivariicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| NZ_JAJWHX010000006.1_66 | vegetarian > omnivore | 1.03698 | 0.02460 |
| NZ_JAJWHX010000006.1_69 | vegan > omnivore | 1.02081 | 0.02250 |
| NZ_JAJWHX010000006.1_69 | vegetarian > omnivore | 1.38328 | 0.02460 |
| NZ_JAJWHX010000006.1_70 | vegetarian > omnivore | 1.41201 | 0.02460 |