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Cluster: GCF_021624045.1_ASM2162404v1_genomic_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_13 13919 14809 + 3.A.1.1.11
TC NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_14 14802 15704 + 3.A.1.1.11
TC NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_15 15717 16844 + 3.A.1.1.11
TC NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_16 16861 18147 + 3.A.1.1.11
TC NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_17 18207 19550 - 1.B.15.1.1
CAZyme NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_18 19672 21108 - GH32
TC NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_19 21125 22366 - 2.A.1.5.2
TF NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_20 22607 23602 + LacI
TC NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_21 23599 24930 - 2.A.1.1.2
pfam NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_22 25267 26028 - adh_short | adh_short_C2
CAZyme NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_23 26513 27688 + PL22 | PL22
TC NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_24 27824 28519 - 1.B.35.1.7
pfam NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_25 28769 29947 - Thiolase_N | ketoacyl-synt | Thiolase_C
TF NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_26 30072 30935 - HTH_1
TC NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_27 31038 31499 + 2.A.117.1.3
TC NZ_JAJWHX010000053.1 NZ_JAJWHX010000053.1_28 31623 32852 + 2.A.42.2.5
Gene ID: NZ_JAJWHX010000053.1_13
Type: TC
Location: 13919 - 14809 (+)
Gene ID: NZ_JAJWHX010000053.1_14
Type: TC
Location: 14802 - 15704 (+)
Gene ID: NZ_JAJWHX010000053.1_15
Type: TC
Location: 15717 - 16844 (+)
Gene ID: NZ_JAJWHX010000053.1_16
Type: TC
Location: 16861 - 18147 (+)
Gene ID: NZ_JAJWHX010000053.1_17
Type: TC
Location: 18207 - 19550 (-)
Gene ID: NZ_JAJWHX010000053.1_18
Type: CAZyme
Location: 19672 - 21108 (-)
Gene ID: NZ_JAJWHX010000053.1_19
Type: TC
Location: 21125 - 22366 (-)
Gene ID: NZ_JAJWHX010000053.1_20
Type: TF
Location: 22607 - 23602 (+)
Gene ID: NZ_JAJWHX010000053.1_21
Type: TC
Location: 23599 - 24930 (-)
Gene ID: NZ_JAJWHX010000053.1_22
Type: pfam
Location: 25267 - 26028 (-)
Gene ID: NZ_JAJWHX010000053.1_23
Type: CAZyme
Location: 26513 - 27688 (+)
Gene ID: NZ_JAJWHX010000053.1_24
Type: TC
Location: 27824 - 28519 (-)
Gene ID: NZ_JAJWHX010000053.1_25
Type: pfam
Location: 28769 - 29947 (-)
Gene ID: NZ_JAJWHX010000053.1_26
Type: TF
Location: 30072 - 30935 (-)
Gene ID: NZ_JAJWHX010000053.1_27
Type: TC
Location: 31038 - 31499 (+)
Gene ID: NZ_JAJWHX010000053.1_28
Type: TC
Location: 31623 - 32852 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
NZ_JAJWHX010000053.1_15 vegan > omnivore 1.07877 0.01958
NZ_JAJWHX010000053.1_15 vegetarian > omnivore 1.08535 0.02460
NZ_JAJWHX010000053.1_16 vegetarian > omnivore 1.83726 0.02460
NZ_JAJWHX010000053.1_25 vegetarian > omnivore 1.98597 0.02460

🧭 Explore Read Mapping of CGC

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