Cluster: FerrettiP_2018_SRR5274072_bin.2_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: FerrettiP_2018_SRR5274072_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | FerrettiP_2018_SRR5274072_bin.2_k119_6418 | FerrettiP_2018_SRR5274072_bin.2_k119_6418_2 | 1152 | 1784 | + | 9.B.18.1.3 |
| pfam | FerrettiP_2018_SRR5274072_bin.2_k119_6418 | FerrettiP_2018_SRR5274072_bin.2_k119_6418_3 | 1849 | 3393 | + | tRNA-synt_2 | tRNA_anti-codon |
| TC | FerrettiP_2018_SRR5274072_bin.2_k119_6418 | FerrettiP_2018_SRR5274072_bin.2_k119_6418_4 | 3466 | 4500 | + | 9.B.34.1.3 |
| pfam | FerrettiP_2018_SRR5274072_bin.2_k119_6418 | FerrettiP_2018_SRR5274072_bin.2_k119_6418_5 | 4497 | 5222 | + | MS_channel_2nd |
| CAZyme | FerrettiP_2018_SRR5274072_bin.2_k119_6418 | FerrettiP_2018_SRR5274072_bin.2_k119_6418_6 | 5283 | 6374 | - | GH3 |
Gene ID: FerrettiP_2018_SRR5274072_bin.2_k119_6418_2
Type: TC
Location: 1152 - 1784 (+)
Type: TC
Location: 1152 - 1784 (+)
Gene ID: FerrettiP_2018_SRR5274072_bin.2_k119_6418_3
Type: pfam
Location: 1849 - 3393 (+)
Type: pfam
Location: 1849 - 3393 (+)
Gene ID: FerrettiP_2018_SRR5274072_bin.2_k119_6418_4
Type: TC
Location: 3466 - 4500 (+)
Type: TC
Location: 3466 - 4500 (+)
Gene ID: FerrettiP_2018_SRR5274072_bin.2_k119_6418_5
Type: pfam
Location: 4497 - 5222 (+)
Type: pfam
Location: 4497 - 5222 (+)
Gene ID: FerrettiP_2018_SRR5274072_bin.2_k119_6418_6
Type: CAZyme
Location: 5283 - 6374 (-)
Type: CAZyme
Location: 5283 - 6374 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Acidovorax
Species
Acidovorax sp003231145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.