Cluster: FerrettiP_2018_SRR5274072_bin.2_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: FerrettiP_2018_SRR5274072_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | FerrettiP_2018_SRR5274072_bin.2_k119_24379 | FerrettiP_2018_SRR5274072_bin.2_k119_24379_2 | 165 | 1229 | - | GT28 |
| TC | FerrettiP_2018_SRR5274072_bin.2_k119_24379 | FerrettiP_2018_SRR5274072_bin.2_k119_24379_3 | 1226 | 2494 | - | 2.A.103.1.1 |
| pfam | FerrettiP_2018_SRR5274072_bin.2_k119_24379 | FerrettiP_2018_SRR5274072_bin.2_k119_24379_4 | 2491 | 4440 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | FerrettiP_2018_SRR5274072_bin.2_k119_24379 | FerrettiP_2018_SRR5274072_bin.2_k119_24379_5 | 4437 | 5615 | - | 9.B.146.1.6 |
Gene ID: FerrettiP_2018_SRR5274072_bin.2_k119_24379_2
Type: CAZyme
Location: 165 - 1229 (-)
Type: CAZyme
Location: 165 - 1229 (-)
Gene ID: FerrettiP_2018_SRR5274072_bin.2_k119_24379_3
Type: TC
Location: 1226 - 2494 (-)
Type: TC
Location: 1226 - 2494 (-)
Gene ID: FerrettiP_2018_SRR5274072_bin.2_k119_24379_4
Type: pfam
Location: 2491 - 4440 (-)
Type: pfam
Location: 2491 - 4440 (-)
Gene ID: FerrettiP_2018_SRR5274072_bin.2_k119_24379_5
Type: TC
Location: 4437 - 5615 (-)
Type: TC
Location: 4437 - 5615 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Acidovorax
Species
Acidovorax sp003231145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.