Cluster: FerrettiP_2018_SRR5274049_bin.5_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: FerrettiP_2018_SRR5274049_bin.5
- CGC Family ID: CGCFAM_00191
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | FerrettiP_2018_SRR5274049_bin.5_k119_2347 | FerrettiP_2018_SRR5274049_bin.5_k119_2347_1 | 131 | 943 | - | 3.A.1.15.11 |
| TC | FerrettiP_2018_SRR5274049_bin.5_k119_2347 | FerrettiP_2018_SRR5274049_bin.5_k119_2347_2 | 944 | 1798 | - | 3.A.1.15.11 |
| TC | FerrettiP_2018_SRR5274049_bin.5_k119_2347 | FerrettiP_2018_SRR5274049_bin.5_k119_2347_3 | 1836 | 2831 | - | 3.A.1.15.11 |
| pfam | FerrettiP_2018_SRR5274049_bin.5_k119_2347 | FerrettiP_2018_SRR5274049_bin.5_k119_2347_4 | 3160 | 3804 | - | DUF421 | YetF_N |
| pfam | FerrettiP_2018_SRR5274049_bin.5_k119_2347 | FerrettiP_2018_SRR5274049_bin.5_k119_2347_5 | 3809 | 4252 | - | DUF3290 |
| CAZyme | FerrettiP_2018_SRR5274049_bin.5_k119_2347 | FerrettiP_2018_SRR5274049_bin.5_k119_2347_6 | 4285 | 5451 | - | CE9 |
| STP | FerrettiP_2018_SRR5274049_bin.5_k119_2347 | FerrettiP_2018_SRR5274049_bin.5_k119_2347_7 | 5509 | 6675 | - | SIS |
| TF | FerrettiP_2018_SRR5274049_bin.5_k119_2347 | FerrettiP_2018_SRR5274049_bin.5_k119_2347_8 | 6698 | 7426 | - | GntR |
| TC | FerrettiP_2018_SRR5274049_bin.5_k119_2347 | FerrettiP_2018_SRR5274049_bin.5_k119_2347_9 | 7481 | 8560 | - | 4.A.6.1.4 |
| TC | FerrettiP_2018_SRR5274049_bin.5_k119_2347 | FerrettiP_2018_SRR5274049_bin.5_k119_2347_10 | 8550 | 9356 | - | 4.A.6.1.4 |
| TC | FerrettiP_2018_SRR5274049_bin.5_k119_2347 | FerrettiP_2018_SRR5274049_bin.5_k119_2347_11 | 9491 | 9973 | - | 4.A.6.1.4 |
| pfam | FerrettiP_2018_SRR5274049_bin.5_k119_2347 | FerrettiP_2018_SRR5274049_bin.5_k119_2347_12 | 10068 | 10358 | - | YajC |
| TC | FerrettiP_2018_SRR5274049_bin.5_k119_2347 | FerrettiP_2018_SRR5274049_bin.5_k119_2347_13 | 10392 | 10832 | - | 4.A.6.1.16 |
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_2347_1
Type: TC
Location: 131 - 943 (-)
Type: TC
Location: 131 - 943 (-)
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_2347_2
Type: TC
Location: 944 - 1798 (-)
Type: TC
Location: 944 - 1798 (-)
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_2347_3
Type: TC
Location: 1836 - 2831 (-)
Type: TC
Location: 1836 - 2831 (-)
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_2347_4
Type: pfam
Location: 3160 - 3804 (-)
Type: pfam
Location: 3160 - 3804 (-)
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_2347_5
Type: pfam
Location: 3809 - 4252 (-)
Type: pfam
Location: 3809 - 4252 (-)
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_2347_6
Type: CAZyme
Location: 4285 - 5451 (-)
Type: CAZyme
Location: 4285 - 5451 (-)
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_2347_7
Type: STP
Location: 5509 - 6675 (-)
Type: STP
Location: 5509 - 6675 (-)
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_2347_8
Type: TF
Location: 6698 - 7426 (-)
Type: TF
Location: 6698 - 7426 (-)
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_2347_9
Type: TC
Location: 7481 - 8560 (-)
Type: TC
Location: 7481 - 8560 (-)
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_2347_10
Type: TC
Location: 8550 - 9356 (-)
Type: TC
Location: 8550 - 9356 (-)
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_2347_11
Type: TC
Location: 9491 - 9973 (-)
Type: TC
Location: 9491 - 9973 (-)
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_2347_12
Type: pfam
Location: 10068 - 10358 (-)
Type: pfam
Location: 10068 - 10358 (-)
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_2347_13
Type: TC
Location: 10392 - 10832 (-)
Type: TC
Location: 10392 - 10832 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Lancefieldella
Species
Lancefieldella sp902373375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.