Cluster: FerrettiP_2018_SRR5274049_bin.5_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: FerrettiP_2018_SRR5274049_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | FerrettiP_2018_SRR5274049_bin.5_k119_1818 | FerrettiP_2018_SRR5274049_bin.5_k119_1818_16 | 13748 | 14779 | + | 9.B.146.1.6 |
| pfam | FerrettiP_2018_SRR5274049_bin.5_k119_1818 | FerrettiP_2018_SRR5274049_bin.5_k119_1818_17 | 14809 | 16212 | + | Mur_ligase_C | Mur_ligase_M |
| TC | FerrettiP_2018_SRR5274049_bin.5_k119_1818 | FerrettiP_2018_SRR5274049_bin.5_k119_1818_18 | 16212 | 17741 | + | 2.A.103.1.3 |
| CAZyme | FerrettiP_2018_SRR5274049_bin.5_k119_1818 | FerrettiP_2018_SRR5274049_bin.5_k119_1818_19 | 17765 | 18898 | + | GT28 |
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_1818_16
Type: TC
Location: 13748 - 14779 (+)
Type: TC
Location: 13748 - 14779 (+)
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_1818_17
Type: pfam
Location: 14809 - 16212 (+)
Type: pfam
Location: 14809 - 16212 (+)
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_1818_18
Type: TC
Location: 16212 - 17741 (+)
Type: TC
Location: 16212 - 17741 (+)
Gene ID: FerrettiP_2018_SRR5274049_bin.5_k119_1818_19
Type: CAZyme
Location: 17765 - 18898 (+)
Type: CAZyme
Location: 17765 - 18898 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Lancefieldella
Species
Lancefieldella sp902373375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.