Cluster: DianaHT_2018_SRR6795027_bin.3_CGC92
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate: pectin
- Genome ID: DianaHT_2018_SRR6795027_bin.3
- CGC Family ID: CGCFAM_01238
- Continent: Asia
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | DianaHT_2018_SRR6795027_bin.3_k141_11361 | DianaHT_2018_SRR6795027_bin.3_k141_11361_85 | 149491 | 152667 | - | 1.B.14.6.1 |
| pfam | DianaHT_2018_SRR6795027_bin.3_k141_11361 | DianaHT_2018_SRR6795027_bin.3_k141_11361_86 | 152921 | 153304 | - | rhaM |
| CAZyme | DianaHT_2018_SRR6795027_bin.3_k141_11361 | DianaHT_2018_SRR6795027_bin.3_k141_11361_87 | 153390 | 155996 | - | GH31_4 |
| CAZyme | DianaHT_2018_SRR6795027_bin.3_k141_11361 | DianaHT_2018_SRR6795027_bin.3_k141_11361_88 | 156201 | 157841 | - | GH29 |
| TF | DianaHT_2018_SRR6795027_bin.3_k141_11361 | DianaHT_2018_SRR6795027_bin.3_k141_11361_89 | 158061 | 158918 | + | HTH_AraC | HTH_AraC |
| sulfatase | DianaHT_2018_SRR6795027_bin.3_k141_11361 | DianaHT_2018_SRR6795027_bin.3_k141_11361_90 | 159113 | 160243 | - | S1_22 |
| CAZyme | DianaHT_2018_SRR6795027_bin.3_k141_11361 | DianaHT_2018_SRR6795027_bin.3_k141_11361_91 | 160515 | 161774 | - | GH8 |
| CAZyme | DianaHT_2018_SRR6795027_bin.3_k141_11361 | DianaHT_2018_SRR6795027_bin.3_k141_11361_92 | 161824 | 164415 | - | GH3 |
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_11361_85
Type: TC
Location: 149491 - 152667 (-)
Type: TC
Location: 149491 - 152667 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_11361_86
Type: pfam
Location: 152921 - 153304 (-)
Type: pfam
Location: 152921 - 153304 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_11361_87
Type: CAZyme
Location: 153390 - 155996 (-)
Type: CAZyme
Location: 153390 - 155996 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_11361_88
Type: CAZyme
Location: 156201 - 157841 (-)
Type: CAZyme
Location: 156201 - 157841 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_11361_89
Type: TF
Location: 158061 - 158918 (+)
Type: TF
Location: 158061 - 158918 (+)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_11361_90
Type: sulfatase
Location: 159113 - 160243 (-)
Type: sulfatase
Location: 159113 - 160243 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_11361_91
Type: CAZyme
Location: 160515 - 161774 (-)
Type: CAZyme
Location: 160515 - 161774 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_11361_92
Type: CAZyme
Location: 161824 - 164415 (-)
Type: CAZyme
Location: 161824 - 164415 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900552405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| DianaHT_2018_SRR6795027_bin.3_k141_11361_89 | vegan > omnivore | 1.25175 | 0.01168 |
| DianaHT_2018_SRR6795027_bin.3_k141_11361_89 | vegetarian > omnivore | 1.41193 | 0.00085 |
| DianaHT_2018_SRR6795027_bin.3_k141_11361_90 | vegan > omnivore | 1.34770 | 0.00989 |
| DianaHT_2018_SRR6795027_bin.3_k141_11361_90 | vegetarian > omnivore | 1.35607 | 0.00085 |
| DianaHT_2018_SRR6795027_bin.3_k141_11361_91 | vegetarian > omnivore | 1.95331 | 0.00085 |
| DianaHT_2018_SRR6795027_bin.3_k141_11361_91 | vegetarian > vegan | 1.26339 | 0.01693 |