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Cluster: DianaHT_2018_SRR6795027_bin.3_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_294 359123 360604 + 2.A.50.2.1
NULL(UNKNOWN) DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_295 360585 361190 - NULL(UNKNOWN)
[View Structural Homologs]
STP DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_296 361203 361694 - Sigma70_r2 | Sigma70_r4_2
CAZyme DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_297 361868 364198 - GH20
CAZyme DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_298 364300 365850 - GH20
pfam DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_299 365863 366630 - Glucosamine_iso
CAZyme DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_300 366627 367823 - CE9
TC DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_301 367799 369130 - 2.A.1.7.9
NULL(UNKNOWN) DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_302 369137 370258 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_303 370501 371538 - GH18
pfam DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_304 371555 371908 - PKD_3
TC DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_305 371939 373528 - 8.A.46.2.2
TC DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_306 373542 376697 - 1.B.14.6.2
TF DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_307 376752 377948 - HTH_AraC | HTH_AraC
TF DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_308 378076 378912 - HTH_AraC
TC DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_309 379085 380242 + 2.A.6.2.47
TC DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_310 380246 383449 + 2.A.6.2.22
TC DianaHT_2018_SRR6795027_bin.3_k141_6559 DianaHT_2018_SRR6795027_bin.3_k141_6559_311 383446 384882 + 2.A.6.2.20
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_294
Type: TC
Location: 359123 - 360604 (+)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_295
Type:
Location: 360585 - 361190 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_296
Type: STP
Location: 361203 - 361694 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_297
Type: CAZyme
Location: 361868 - 364198 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_298
Type: CAZyme
Location: 364300 - 365850 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_299
Type: pfam
Location: 365863 - 366630 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_300
Type: CAZyme
Location: 366627 - 367823 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_301
Type: TC
Location: 367799 - 369130 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_302
Type:
Location: 369137 - 370258 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_303
Type: CAZyme
Location: 370501 - 371538 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_304
Type: pfam
Location: 371555 - 371908 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_305
Type: TC
Location: 371939 - 373528 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_306
Type: TC
Location: 373542 - 376697 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_307
Type: TF
Location: 376752 - 377948 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_308
Type: TF
Location: 378076 - 378912 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_309
Type: TC
Location: 379085 - 380242 (+)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_310
Type: TC
Location: 380246 - 383449 (+)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6559_311
Type: TC
Location: 383446 - 384882 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
DianaHT_2018_SRR6795027_bin.3_k141_6559_297 vegetarian > omnivore 1.74137 0.00085
DianaHT_2018_SRR6795027_bin.3_k141_6559_297 vegan > omnivore 1.11609 0.00989
DianaHT_2018_SRR6795027_bin.3_k141_6559_298 vegan > omnivore 1.72445 0.01168
DianaHT_2018_SRR6795027_bin.3_k141_6559_298 vegetarian > omnivore 1.91344 0.00085
DianaHT_2018_SRR6795027_bin.3_k141_6559_299 vegetarian > omnivore 3.24025 0.00085
DianaHT_2018_SRR6795027_bin.3_k141_6559_299 vegan > omnivore 2.86790 0.01168
DianaHT_2018_SRR6795027_bin.3_k141_6559_300 vegan > omnivore 1.95718 0.01168
DianaHT_2018_SRR6795027_bin.3_k141_6559_300 vegetarian > omnivore 2.33334 0.00085
DianaHT_2018_SRR6795027_bin.3_k141_6559_301 vegan > omnivore 2.14464 0.01168
DianaHT_2018_SRR6795027_bin.3_k141_6559_301 vegetarian > omnivore 2.65822 0.00085
DianaHT_2018_SRR6795027_bin.3_k141_6559_302 vegan > omnivore 2.51693 0.01168
DianaHT_2018_SRR6795027_bin.3_k141_6559_302 vegetarian > omnivore 3.01432 0.00085
DianaHT_2018_SRR6795027_bin.3_k141_6559_303 vegetarian > omnivore 2.34745 0.00085
DianaHT_2018_SRR6795027_bin.3_k141_6559_303 vegan > omnivore 1.86266 0.01168
DianaHT_2018_SRR6795027_bin.3_k141_6559_304 vegetarian > omnivore 2.46176 0.00085
DianaHT_2018_SRR6795027_bin.3_k141_6559_304 vegan > omnivore 1.65268 0.01168
DianaHT_2018_SRR6795027_bin.3_k141_6559_305 vegetarian > omnivore 1.89768 0.00085
DianaHT_2018_SRR6795027_bin.3_k141_6559_305 vegan > omnivore 1.18530 0.01168
DianaHT_2018_SRR6795027_bin.3_k141_6559_306 vegan > omnivore 1.31018 0.01168
DianaHT_2018_SRR6795027_bin.3_k141_6559_306 vegetarian > omnivore 1.73116 0.00085
DianaHT_2018_SRR6795027_bin.3_k141_6559_307 vegan > omnivore 2.09487 0.01168
DianaHT_2018_SRR6795027_bin.3_k141_6559_307 vegetarian > omnivore 2.30467 0.00085
DianaHT_2018_SRR6795027_bin.3_k141_6559_308 vegan > omnivore 1.12641 0.00989
DianaHT_2018_SRR6795027_bin.3_k141_6559_308 vegetarian > omnivore 2.08205 0.00085
DianaHT_2018_SRR6795027_bin.3_k141_6559_311 vegan > omnivore 1.42710 0.01168
DianaHT_2018_SRR6795027_bin.3_k141_6559_311 vegetarian > vegan 1.08096 0.01692
DianaHT_2018_SRR6795027_bin.3_k141_6559_311 vegetarian > omnivore 2.50805 0.00085

🧭 Explore Read Mapping of CGC

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