Cluster: DianaHT_2018_SRR6795027_bin.3_CGC43
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate: beta-glucan
- Genome ID: DianaHT_2018_SRR6795027_bin.3
- CGC Family ID: CGCFAM_00934
- Continent: Asia
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | DianaHT_2018_SRR6795027_bin.3_k141_6306 | DianaHT_2018_SRR6795027_bin.3_k141_6306_35 | 35687 | 38668 | + | GH3 |
| CAZyme | DianaHT_2018_SRR6795027_bin.3_k141_6306 | DianaHT_2018_SRR6795027_bin.3_k141_6306_36 | 38799 | 41939 | + | GH3 |
| pfam | DianaHT_2018_SRR6795027_bin.3_k141_6306 | DianaHT_2018_SRR6795027_bin.3_k141_6306_37 | 42130 | 42759 | - | OMP_b-brl |
| pfam | DianaHT_2018_SRR6795027_bin.3_k141_6306 | DianaHT_2018_SRR6795027_bin.3_k141_6306_38 | 42830 | 43462 | - | DUF4136 |
| TC | DianaHT_2018_SRR6795027_bin.3_k141_6306 | DianaHT_2018_SRR6795027_bin.3_k141_6306_39 | 43762 | 44769 | - | 8.A.5.1.3 |
| CAZyme | DianaHT_2018_SRR6795027_bin.3_k141_6306 | DianaHT_2018_SRR6795027_bin.3_k141_6306_40 | 45093 | 47372 | + | GH3 |
| TF | DianaHT_2018_SRR6795027_bin.3_k141_6306 | DianaHT_2018_SRR6795027_bin.3_k141_6306_41 | 47552 | 48439 | + | HTH_AraC | HTH_AraC |
| CAZyme | DianaHT_2018_SRR6795027_bin.3_k141_6306 | DianaHT_2018_SRR6795027_bin.3_k141_6306_42 | 48511 | 49794 | + | CE7 |
| CAZyme | DianaHT_2018_SRR6795027_bin.3_k141_6306 | DianaHT_2018_SRR6795027_bin.3_k141_6306_43 | 49821 | 51107 | + | GH5_7 |
| CAZyme | DianaHT_2018_SRR6795027_bin.3_k141_6306 | DianaHT_2018_SRR6795027_bin.3_k141_6306_44 | 51112 | 52092 | + | GH5_2 |
| TC | DianaHT_2018_SRR6795027_bin.3_k141_6306 | DianaHT_2018_SRR6795027_bin.3_k141_6306_45 | 52256 | 55459 | + | 1.B.14.6.1 |
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6306_35
Type: CAZyme
Location: 35687 - 38668 (+)
Type: CAZyme
Location: 35687 - 38668 (+)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6306_36
Type: CAZyme
Location: 38799 - 41939 (+)
Type: CAZyme
Location: 38799 - 41939 (+)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6306_37
Type: pfam
Location: 42130 - 42759 (-)
Type: pfam
Location: 42130 - 42759 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6306_38
Type: pfam
Location: 42830 - 43462 (-)
Type: pfam
Location: 42830 - 43462 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6306_39
Type: TC
Location: 43762 - 44769 (-)
Type: TC
Location: 43762 - 44769 (-)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6306_40
Type: CAZyme
Location: 45093 - 47372 (+)
Type: CAZyme
Location: 45093 - 47372 (+)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6306_41
Type: TF
Location: 47552 - 48439 (+)
Type: TF
Location: 47552 - 48439 (+)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6306_42
Type: CAZyme
Location: 48511 - 49794 (+)
Type: CAZyme
Location: 48511 - 49794 (+)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6306_43
Type: CAZyme
Location: 49821 - 51107 (+)
Type: CAZyme
Location: 49821 - 51107 (+)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6306_44
Type: CAZyme
Location: 51112 - 52092 (+)
Type: CAZyme
Location: 51112 - 52092 (+)
Gene ID: DianaHT_2018_SRR6795027_bin.3_k141_6306_45
Type: TC
Location: 52256 - 55459 (+)
Type: TC
Location: 52256 - 55459 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900552405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| DianaHT_2018_SRR6795027_bin.3_k141_6306_35 | vegan > omnivore | 1.68970 | 0.01168 |
| DianaHT_2018_SRR6795027_bin.3_k141_6306_35 | vegetarian > omnivore | 2.27857 | 0.00085 |
| DianaHT_2018_SRR6795027_bin.3_k141_6306_36 | vegetarian > omnivore | 1.17038 | 0.00085 |
| DianaHT_2018_SRR6795027_bin.3_k141_6306_40 | vegan > omnivore | 1.67401 | 0.01168 |
| DianaHT_2018_SRR6795027_bin.3_k141_6306_40 | vegetarian > omnivore | 1.74952 | 0.00085 |
| DianaHT_2018_SRR6795027_bin.3_k141_6306_42 | vegan > omnivore | 1.33689 | 0.00989 |
| DianaHT_2018_SRR6795027_bin.3_k141_6306_42 | vegetarian > omnivore | 1.28179 | 0.00085 |
| DianaHT_2018_SRR6795027_bin.3_k141_6306_44 | vegan > omnivore | 1.58768 | 0.01168 |
| DianaHT_2018_SRR6795027_bin.3_k141_6306_44 | vegetarian > omnivore | 1.25698 | 0.00085 |