Cluster: DianaHT_2018_SRR6795020_bin.19_CGC5
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: DianaHT_2018_SRR6795020_bin.19
- CGC Family ID: CGCFAM_01160
- Continent: Asia
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_160 | 185811 | 187628 | + | GH154 |
| pfam | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_161 | 187807 | 188238 | + | EIIA-man |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_162 | 188304 | 188786 | + | 4.A.6.1.16 |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_163 | 188859 | 189728 | + | 4.A.6.1.6 |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_164 | 189721 | 190596 | + | 4.A.6.1.19 |
| NULL(UNKNOWN) | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_165 | 190693 | 191337 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_166 | 191318 | 192469 | + | GH88 |
| pfam | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_167 | 192463 | 193317 | + | Hydrolase_3 |
| CAZyme | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_168 | 193327 | 194994 | + | CBM91 | GH43_11 |
| NULL(UNKNOWN) | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_169 | 194994 | 195794 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_170 | 195796 | 196821 | + | GH43_24 |
| CAZyme | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_171 | 196848 | 198068 | + | GH28 |
| CAZyme | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_172 | 198084 | 199769 | + | GH154 |
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_160
Type: CAZyme
Location: 185811 - 187628 (+)
Type: CAZyme
Location: 185811 - 187628 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_161
Type: pfam
Location: 187807 - 188238 (+)
Type: pfam
Location: 187807 - 188238 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_162
Type: TC
Location: 188304 - 188786 (+)
Type: TC
Location: 188304 - 188786 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_163
Type: TC
Location: 188859 - 189728 (+)
Type: TC
Location: 188859 - 189728 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_164
Type: TC
Location: 189721 - 190596 (+)
Type: TC
Location: 189721 - 190596 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_165
Type:
Location: 190693 - 191337 (+)
Type:
Location: 190693 - 191337 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_166
Type: CAZyme
Location: 191318 - 192469 (+)
Type: CAZyme
Location: 191318 - 192469 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_167
Type: pfam
Location: 192463 - 193317 (+)
Type: pfam
Location: 192463 - 193317 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_168
Type: CAZyme
Location: 193327 - 194994 (+)
Type: CAZyme
Location: 193327 - 194994 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_169
Type:
Location: 194994 - 195794 (+)
Type:
Location: 194994 - 195794 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_170
Type: CAZyme
Location: 195796 - 196821 (+)
Type: CAZyme
Location: 195796 - 196821 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_171
Type: CAZyme
Location: 196848 - 198068 (+)
Type: CAZyme
Location: 196848 - 198068 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_172
Type: CAZyme
Location: 198084 - 199769 (+)
Type: CAZyme
Location: 198084 - 199769 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.