Cluster: DianaHT_2018_SRR6795020_bin.19_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: DianaHT_2018_SRR6795020_bin.19
- Continent: Asia
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_94 | 104251 | 104694 | + | 4.A.6.1.16 |
| pfam | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_95 | 104694 | 104975 | + | YajC |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_96 | 105012 | 105494 | + | 4.A.6.1.4 |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_97 | 105585 | 106385 | + | 4.A.6.1.4 |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_98 | 106375 | 107457 | + | 4.A.6.1.4 |
| TF | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_99 | 107643 | 108374 | + | GntR |
| STP | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_100 | 108489 | 109655 | + | SIS | SIS |
| CAZyme | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_101 | 109773 | 110942 | + | CE9 |
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_94
Type: TC
Location: 104251 - 104694 (+)
Type: TC
Location: 104251 - 104694 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_95
Type: pfam
Location: 104694 - 104975 (+)
Type: pfam
Location: 104694 - 104975 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_96
Type: TC
Location: 105012 - 105494 (+)
Type: TC
Location: 105012 - 105494 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_97
Type: TC
Location: 105585 - 106385 (+)
Type: TC
Location: 105585 - 106385 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_98
Type: TC
Location: 106375 - 107457 (+)
Type: TC
Location: 106375 - 107457 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_99
Type: TF
Location: 107643 - 108374 (+)
Type: TF
Location: 107643 - 108374 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_100
Type: STP
Location: 108489 - 109655 (+)
Type: STP
Location: 108489 - 109655 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_101
Type: CAZyme
Location: 109773 - 110942 (+)
Type: CAZyme
Location: 109773 - 110942 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.