Cluster: DianaHT_2018_SRR6795020_bin.19_CGC2
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: DianaHT_2018_SRR6795020_bin.19
- Continent: Asia
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_5 | 7399 | 9849 | - | 4.A.1.1.8 |
| TF | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_6 | 10077 | 10796 | + | GntR |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_7 | 11103 | 12419 | + | 3.A.1.1.45 |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_8 | 12507 | 13361 | + | 3.A.1.1.45 |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_9 | 13361 | 14200 | + | 3.A.1.1.45 |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_10 | 14269 | 15468 | + | 3.A.1.1.22 |
| CAZyme | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_11 | 16003 | 18270 | - | GT35 |
| CAZyme | DianaHT_2018_SRR6795020_bin.19_k141_5747 | DianaHT_2018_SRR6795020_bin.19_k141_5747_12 | 18400 | 19905 | - | GH77 |
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_5
Type: TC
Location: 7399 - 9849 (-)
Type: TC
Location: 7399 - 9849 (-)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_6
Type: TF
Location: 10077 - 10796 (+)
Type: TF
Location: 10077 - 10796 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_7
Type: TC
Location: 11103 - 12419 (+)
Type: TC
Location: 11103 - 12419 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_8
Type: TC
Location: 12507 - 13361 (+)
Type: TC
Location: 12507 - 13361 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_9
Type: TC
Location: 13361 - 14200 (+)
Type: TC
Location: 13361 - 14200 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_10
Type: TC
Location: 14269 - 15468 (+)
Type: TC
Location: 14269 - 15468 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_11
Type: CAZyme
Location: 16003 - 18270 (-)
Type: CAZyme
Location: 16003 - 18270 (-)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_5747_12
Type: CAZyme
Location: 18400 - 19905 (-)
Type: CAZyme
Location: 18400 - 19905 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.