Cluster: DianaHT_2018_SRR6795020_bin.19_CGC14
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: DianaHT_2018_SRR6795020_bin.19
- Continent: Asia
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | DianaHT_2018_SRR6795020_bin.19_k141_22184 | DianaHT_2018_SRR6795020_bin.19_k141_22184_145 | 167031 | 168407 | - | GH13_20 |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_22184 | DianaHT_2018_SRR6795020_bin.19_k141_22184_146 | 168561 | 169757 | - | 2.A.1.2.18 |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_22184 | DianaHT_2018_SRR6795020_bin.19_k141_22184_147 | 169879 | 172239 | - | 9.A.8.1.6 |
| NULL(UNKNOWN) | DianaHT_2018_SRR6795020_bin.19_k141_22184 | DianaHT_2018_SRR6795020_bin.19_k141_22184_148 | 172361 | 172681 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | DianaHT_2018_SRR6795020_bin.19_k141_22184 | DianaHT_2018_SRR6795020_bin.19_k141_22184_149 | 172729 | 173628 | - | S09.UPW |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_22184 | DianaHT_2018_SRR6795020_bin.19_k141_22184_150 | 173872 | 174435 | + | 4.A.1.2.6 |
| pfam | DianaHT_2018_SRR6795020_bin.19_k141_22184 | DianaHT_2018_SRR6795020_bin.19_k141_22184_151 | 174617 | 176020 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | DianaHT_2018_SRR6795020_bin.19_k141_22184 | DianaHT_2018_SRR6795020_bin.19_k141_22184_152 | 176278 | 177063 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_22184 | DianaHT_2018_SRR6795020_bin.19_k141_22184_153 | 177224 | 178204 | + | 3.A.1.34.1 |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_22184 | DianaHT_2018_SRR6795020_bin.19_k141_22184_154 | 178409 | 179332 | + | 3.A.1.34.1 |
| TC | DianaHT_2018_SRR6795020_bin.19_k141_22184 | DianaHT_2018_SRR6795020_bin.19_k141_22184_155 | 179325 | 180119 | + | 3.A.1.34.1 |
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_22184_145
Type: CAZyme
Location: 167031 - 168407 (-)
Type: CAZyme
Location: 167031 - 168407 (-)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_22184_146
Type: TC
Location: 168561 - 169757 (-)
Type: TC
Location: 168561 - 169757 (-)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_22184_147
Type: TC
Location: 169879 - 172239 (-)
Type: TC
Location: 169879 - 172239 (-)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_22184_148
Type:
Location: 172361 - 172681 (-)
Type:
Location: 172361 - 172681 (-)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_22184_149
Type: peptidase
Location: 172729 - 173628 (-)
Type: peptidase
Location: 172729 - 173628 (-)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_22184_150
Type: TC
Location: 173872 - 174435 (+)
Type: TC
Location: 173872 - 174435 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_22184_151
Type: pfam
Location: 174617 - 176020 (+)
Type: pfam
Location: 174617 - 176020 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_22184_152
Type:
Location: 176278 - 177063 (+)
Type:
Location: 176278 - 177063 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_22184_153
Type: TC
Location: 177224 - 178204 (+)
Type: TC
Location: 177224 - 178204 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_22184_154
Type: TC
Location: 178409 - 179332 (+)
Type: TC
Location: 178409 - 179332 (+)
Gene ID: DianaHT_2018_SRR6795020_bin.19_k141_22184_155
Type: TC
Location: 179325 - 180119 (+)
Type: TC
Location: 179325 - 180119 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.