Cluster: DM140_maxbin.005_sub_CGC18
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: DM140_maxbin.005_sub
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_219717 | k141_219717_9 | 7791 | 9272 | + | 3.A.1.8.1 |
| TC | k141_219717 | k141_219717_10 | 9276 | 10346 | + | 3.A.1.1.3 |
| pfam | k141_219717 | k141_219717_11 | 10797 | 12080 | + | HGD-D |
| TC | k141_219717 | k141_219717_12 | 12265 | 13875 | + | 3.A.1.5.11 |
| TC | k141_219717 | k141_219717_13 | 13962 | 14915 | + | 3.A.1.5.11 |
| TC | k141_219717 | k141_219717_14 | 14915 | 15742 | + | 3.A.1.5.39 |
| TC | k141_219717 | k141_219717_15 | 15746 | 16744 | + | 3.A.1.5.35 |
| TC | k141_219717 | k141_219717_16 | 16731 | 17516 | + | 3.A.1.5.36 |
| pfam | k141_219717 | k141_219717_17 | 17594 | 18757 | + | HGD-D |
| pfam | k141_219717 | k141_219717_18 | 18809 | 19573 | + | BcrAD_BadFG |
| CAZyme | k141_219717 | k141_219717_19 | 19587 | 20831 | + | GT4 |
Gene ID: k141_219717_9
Type: TC
Location: 7791 - 9272 (+)
Type: TC
Location: 7791 - 9272 (+)
Gene ID: k141_219717_10
Type: TC
Location: 9276 - 10346 (+)
Type: TC
Location: 9276 - 10346 (+)
Gene ID: k141_219717_11
Type: pfam
Location: 10797 - 12080 (+)
Type: pfam
Location: 10797 - 12080 (+)
Gene ID: k141_219717_12
Type: TC
Location: 12265 - 13875 (+)
Type: TC
Location: 12265 - 13875 (+)
Gene ID: k141_219717_13
Type: TC
Location: 13962 - 14915 (+)
Type: TC
Location: 13962 - 14915 (+)
Gene ID: k141_219717_14
Type: TC
Location: 14915 - 15742 (+)
Type: TC
Location: 14915 - 15742 (+)
Gene ID: k141_219717_15
Type: TC
Location: 15746 - 16744 (+)
Type: TC
Location: 15746 - 16744 (+)
Gene ID: k141_219717_16
Type: TC
Location: 16731 - 17516 (+)
Type: TC
Location: 16731 - 17516 (+)
Gene ID: k141_219717_17
Type: pfam
Location: 17594 - 18757 (+)
Type: pfam
Location: 17594 - 18757 (+)
Gene ID: k141_219717_18
Type: pfam
Location: 18809 - 19573 (+)
Type: pfam
Location: 18809 - 19573 (+)
Gene ID: k141_219717_19
Type: CAZyme
Location: 19587 - 20831 (+)
Type: CAZyme
Location: 19587 - 20831 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_219717_12 | vegan > omnivore | 2.76323 | 0.00701 |
| k141_219717_13 | vegan > omnivore | 2.67368 | 0.00701 |
| k141_219717_14 | vegan > omnivore | 2.87922 | 0.00701 |
| k141_219717_16 | vegan > omnivore | 2.50827 | 0.00701 |