Cluster: DM123_bin.56_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: DM123_bin.56
- CGC Family ID: CGCFAM_00019
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_102508 | k141_102508_14 | 17352 | 18734 | - | GH4 |
| TC | k141_102508 | k141_102508_15 | 18738 | 20354 | - | 4.A.1.1.3 |
| pfam | k141_102508 | k141_102508_16 | 20454 | 21320 | - | PRD | PRD | CAT_RBD |
| TC | k141_102508 | k141_102508_17 | 21327 | 21839 | - | 4.A.1.2.11 |
| STP | k141_102508 | k141_102508_18 | 22182 | 22943 | - | Fer4 | Fer4 |
| TC | k141_102508 | k141_102508_19 | 23602 | 25824 | - | 1.I.1.1.3 |
Gene ID: k141_102508_14
Type: CAZyme
Location: 17352 - 18734 (-)
Type: CAZyme
Location: 17352 - 18734 (-)
Gene ID: k141_102508_15
Type: TC
Location: 18738 - 20354 (-)
Type: TC
Location: 18738 - 20354 (-)
Gene ID: k141_102508_16
Type: pfam
Location: 20454 - 21320 (-)
Type: pfam
Location: 20454 - 21320 (-)
Gene ID: k141_102508_17
Type: TC
Location: 21327 - 21839 (-)
Type: TC
Location: 21327 - 21839 (-)
Gene ID: k141_102508_18
Type: STP
Location: 22182 - 22943 (-)
Type: STP
Location: 22182 - 22943 (-)
Gene ID: k141_102508_19
Type: TC
Location: 23602 - 25824 (-)
Type: TC
Location: 23602 - 25824 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.