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Cluster: DM028_bin.68_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_228443 k141_228443_22 23739 24908 - CE9
STP k141_228443 k141_228443_23 25026 26192 - SIS | SIS
TF k141_228443 k141_228443_24 26307 27038 - GntR
TC k141_228443 k141_228443_25 27223 28305 - 4.A.6.1.4
TC k141_228443 k141_228443_26 28295 29095 - 4.A.6.1.4
TC k141_228443 k141_228443_27 29186 29668 - 4.A.6.1.4
pfam k141_228443 k141_228443_28 29705 29986 - YajC
TC k141_228443 k141_228443_29 29986 30429 - 4.A.6.1.16
Gene ID: k141_228443_22
Type: CAZyme
Location: 23739 - 24908 (-)
Gene ID: k141_228443_23
Type: STP
Location: 25026 - 26192 (-)
Gene ID: k141_228443_24
Type: TF
Location: 26307 - 27038 (-)
Gene ID: k141_228443_25
Type: TC
Location: 27223 - 28305 (-)
Gene ID: k141_228443_26
Type: TC
Location: 28295 - 29095 (-)
Gene ID: k141_228443_27
Type: TC
Location: 29186 - 29668 (-)
Gene ID: k141_228443_28
Type: pfam
Location: 29705 - 29986 (-)
Gene ID: k141_228443_29
Type: TC
Location: 29986 - 30429 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_228443_28 vegan > omnivore 1.13219 0.00629

🧭 Explore Read Mapping of CGC

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