Cluster: CokerMO_2019_SRR8692240_bin.20_CGC14
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692240_bin.20
- CGC Family ID: CGCFAM_06725
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692240_bin.20_k141_18790 | CokerMO_2019_SRR8692240_bin.20_k141_18790_61 | 63509 | 65461 | + | 8.A.59.2.1 |
| TF | CokerMO_2019_SRR8692240_bin.20_k141_18790 | CokerMO_2019_SRR8692240_bin.20_k141_18790_62 | 65433 | 66953 | + | HTH_AraC | HTH_AraC |
| STP | CokerMO_2019_SRR8692240_bin.20_k141_18790 | CokerMO_2019_SRR8692240_bin.20_k141_18790_63 | 67055 | 68401 | - | SBP_bac_1 |
| TC | CokerMO_2019_SRR8692240_bin.20_k141_18790 | CokerMO_2019_SRR8692240_bin.20_k141_18790_64 | 68650 | 69552 | + | 3.A.1.1.28 |
| TC | CokerMO_2019_SRR8692240_bin.20_k141_18790 | CokerMO_2019_SRR8692240_bin.20_k141_18790_65 | 69565 | 70917 | + | 3.A.1.1.11 |
| CAZyme | CokerMO_2019_SRR8692240_bin.20_k141_18790 | CokerMO_2019_SRR8692240_bin.20_k141_18790_66 | 70960 | 72636 | + | GH123 |
| TC | CokerMO_2019_SRR8692240_bin.20_k141_18790 | CokerMO_2019_SRR8692240_bin.20_k141_18790_67 | 72891 | 74210 | + | 2.A.40.2.1 |
| TF | CokerMO_2019_SRR8692240_bin.20_k141_18790 | CokerMO_2019_SRR8692240_bin.20_k141_18790_68 | 74313 | 75644 | - | 0040586 |
| peptidase | CokerMO_2019_SRR8692240_bin.20_k141_18790 | CokerMO_2019_SRR8692240_bin.20_k141_18790_69 | 75927 | 77102 | + | M20.UPD |
| TC | CokerMO_2019_SRR8692240_bin.20_k141_18790 | CokerMO_2019_SRR8692240_bin.20_k141_18790_70 | 77117 | 78514 | + | 2.A.1.3.33 |
| pfam | CokerMO_2019_SRR8692240_bin.20_k141_18790 | CokerMO_2019_SRR8692240_bin.20_k141_18790_71 | 78783 | 79085 | + | Trns_repr_metal |
| TC | CokerMO_2019_SRR8692240_bin.20_k141_18790 | CokerMO_2019_SRR8692240_bin.20_k141_18790_72 | 79097 | 81643 | + | 3.A.3.5.15 |
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_18790_61
Type: TC
Location: 63509 - 65461 (+)
Type: TC
Location: 63509 - 65461 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_18790_62
Type: TF
Location: 65433 - 66953 (+)
Type: TF
Location: 65433 - 66953 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_18790_63
Type: STP
Location: 67055 - 68401 (-)
Type: STP
Location: 67055 - 68401 (-)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_18790_64
Type: TC
Location: 68650 - 69552 (+)
Type: TC
Location: 68650 - 69552 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_18790_65
Type: TC
Location: 69565 - 70917 (+)
Type: TC
Location: 69565 - 70917 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_18790_66
Type: CAZyme
Location: 70960 - 72636 (+)
Type: CAZyme
Location: 70960 - 72636 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_18790_67
Type: TC
Location: 72891 - 74210 (+)
Type: TC
Location: 72891 - 74210 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_18790_68
Type: TF
Location: 74313 - 75644 (-)
Type: TF
Location: 74313 - 75644 (-)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_18790_69
Type: peptidase
Location: 75927 - 77102 (+)
Type: peptidase
Location: 75927 - 77102 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_18790_70
Type: TC
Location: 77117 - 78514 (+)
Type: TC
Location: 77117 - 78514 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_18790_71
Type: pfam
Location: 78783 - 79085 (+)
Type: pfam
Location: 78783 - 79085 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_18790_72
Type: TC
Location: 79097 - 81643 (+)
Type: TC
Location: 79097 - 81643 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Faecalimonas
Species
Faecalimonas sp900546325
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.