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Cluster: CokerMO_2019_SRR8692240_bin.20_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC CokerMO_2019_SRR8692240_bin.20_k141_1699 CokerMO_2019_SRR8692240_bin.20_k141_1699_43 36200 37828 + 2.A.58.2.2
pfam CokerMO_2019_SRR8692240_bin.20_k141_1699 CokerMO_2019_SRR8692240_bin.20_k141_1699_44 38042 38860 + PHP | PHP_C
peptidase CokerMO_2019_SRR8692240_bin.20_k141_1699 CokerMO_2019_SRR8692240_bin.20_k141_1699_45 38931 39380 + A24.019
TC CokerMO_2019_SRR8692240_bin.20_k141_1699 CokerMO_2019_SRR8692240_bin.20_k141_1699_46 39450 41495 - 9.A.8.1.6
STP CokerMO_2019_SRR8692240_bin.20_k141_1699 CokerMO_2019_SRR8692240_bin.20_k141_1699_47 41488 41721 - FeoA
pfam CokerMO_2019_SRR8692240_bin.20_k141_1699 CokerMO_2019_SRR8692240_bin.20_k141_1699_48 41904 42797 + ABC_trans_CmpB
TC CokerMO_2019_SRR8692240_bin.20_k141_1699 CokerMO_2019_SRR8692240_bin.20_k141_1699_49 42916 44259 - 2.A.66.1.33
TF CokerMO_2019_SRR8692240_bin.20_k141_1699 CokerMO_2019_SRR8692240_bin.20_k141_1699_50 44428 45375 + HTH_AraC | HTH_AraC
TC CokerMO_2019_SRR8692240_bin.20_k141_1699 CokerMO_2019_SRR8692240_bin.20_k141_1699_51 45447 46163 + 3.A.1.147.6
TC CokerMO_2019_SRR8692240_bin.20_k141_1699 CokerMO_2019_SRR8692240_bin.20_k141_1699_52 46153 47721 + 3.A.1.147.4
NULL(UNKNOWN) CokerMO_2019_SRR8692240_bin.20_k141_1699 CokerMO_2019_SRR8692240_bin.20_k141_1699_53 47781 48950 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) CokerMO_2019_SRR8692240_bin.20_k141_1699 CokerMO_2019_SRR8692240_bin.20_k141_1699_54 48991 49509 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme CokerMO_2019_SRR8692240_bin.20_k141_1699 CokerMO_2019_SRR8692240_bin.20_k141_1699_55 49665 50363 + GT51
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_1699_43
Type: TC
Location: 36200 - 37828 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_1699_44
Type: pfam
Location: 38042 - 38860 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_1699_45
Type: peptidase
Location: 38931 - 39380 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_1699_46
Type: TC
Location: 39450 - 41495 (-)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_1699_47
Type: STP
Location: 41488 - 41721 (-)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_1699_48
Type: pfam
Location: 41904 - 42797 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_1699_49
Type: TC
Location: 42916 - 44259 (-)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_1699_50
Type: TF
Location: 44428 - 45375 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_1699_51
Type: TC
Location: 45447 - 46163 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_1699_52
Type: TC
Location: 46153 - 47721 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_1699_53
Type:
Location: 47781 - 48950 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_1699_54
Type:
Location: 48991 - 49509 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_1699_55
Type: CAZyme
Location: 49665 - 50363 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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