Cluster: CokerMO_2019_SRR8692236_bin.2_CGC8
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: CokerMO_2019_SRR8692236_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692236_bin.2_k141_5836 | CokerMO_2019_SRR8692236_bin.2_k141_5836_6 | 8072 | 9577 | + | GH77 |
| CAZyme | CokerMO_2019_SRR8692236_bin.2_k141_5836 | CokerMO_2019_SRR8692236_bin.2_k141_5836_7 | 9707 | 11974 | + | GT35 |
| TC | CokerMO_2019_SRR8692236_bin.2_k141_5836 | CokerMO_2019_SRR8692236_bin.2_k141_5836_8 | 12443 | 13639 | - | 3.A.1.1.22 |
| TC | CokerMO_2019_SRR8692236_bin.2_k141_5836 | CokerMO_2019_SRR8692236_bin.2_k141_5836_9 | 13708 | 14547 | - | 3.A.1.1.45 |
| TC | CokerMO_2019_SRR8692236_bin.2_k141_5836 | CokerMO_2019_SRR8692236_bin.2_k141_5836_10 | 14547 | 15401 | - | 3.A.1.1.45 |
| TC | CokerMO_2019_SRR8692236_bin.2_k141_5836 | CokerMO_2019_SRR8692236_bin.2_k141_5836_11 | 15489 | 16805 | - | 3.A.1.1.45 |
| TF | CokerMO_2019_SRR8692236_bin.2_k141_5836 | CokerMO_2019_SRR8692236_bin.2_k141_5836_12 | 17112 | 17831 | - | GntR |
| TC | CokerMO_2019_SRR8692236_bin.2_k141_5836 | CokerMO_2019_SRR8692236_bin.2_k141_5836_13 | 18089 | 20509 | + | 4.A.1.1.8 |
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5836_6
Type: CAZyme
Location: 8072 - 9577 (+)
Type: CAZyme
Location: 8072 - 9577 (+)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5836_7
Type: CAZyme
Location: 9707 - 11974 (+)
Type: CAZyme
Location: 9707 - 11974 (+)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5836_8
Type: TC
Location: 12443 - 13639 (-)
Type: TC
Location: 12443 - 13639 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5836_9
Type: TC
Location: 13708 - 14547 (-)
Type: TC
Location: 13708 - 14547 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5836_10
Type: TC
Location: 14547 - 15401 (-)
Type: TC
Location: 14547 - 15401 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5836_11
Type: TC
Location: 15489 - 16805 (-)
Type: TC
Location: 15489 - 16805 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5836_12
Type: TF
Location: 17112 - 17831 (-)
Type: TF
Location: 17112 - 17831 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5836_13
Type: TC
Location: 18089 - 20509 (+)
Type: TC
Location: 18089 - 20509 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.