Cluster: CokerMO_2019_SRR8692236_bin.2_CGC4
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: CokerMO_2019_SRR8692236_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692236_bin.2_k141_3148 | CokerMO_2019_SRR8692236_bin.2_k141_3148_282 | 316730 | 317068 | - | 4.A.3.1.2 |
| TF | CokerMO_2019_SRR8692236_bin.2_k141_3148 | CokerMO_2019_SRR8692236_bin.2_k141_3148_283 | 317283 | 318287 | - | LacI |
| TC | CokerMO_2019_SRR8692236_bin.2_k141_3148 | CokerMO_2019_SRR8692236_bin.2_k141_3148_284 | 318644 | 320419 | + | 4.A.3.1.1 |
| CAZyme | CokerMO_2019_SRR8692236_bin.2_k141_3148 | CokerMO_2019_SRR8692236_bin.2_k141_3148_285 | 320486 | 321925 | + | GH1 |
| TF | CokerMO_2019_SRR8692236_bin.2_k141_3148 | CokerMO_2019_SRR8692236_bin.2_k141_3148_286 | 322187 | 323224 | - | LacI |
| CAZyme | CokerMO_2019_SRR8692236_bin.2_k141_3148 | CokerMO_2019_SRR8692236_bin.2_k141_3148_287 | 323566 | 325008 | + | GH1 |
| TC | CokerMO_2019_SRR8692236_bin.2_k141_3148 | CokerMO_2019_SRR8692236_bin.2_k141_3148_288 | 325184 | 326944 | + | 4.A.3.1.1 |
| TF | CokerMO_2019_SRR8692236_bin.2_k141_3148 | CokerMO_2019_SRR8692236_bin.2_k141_3148_289 | 327278 | 328288 | - | LacI |
| TC | CokerMO_2019_SRR8692236_bin.2_k141_3148 | CokerMO_2019_SRR8692236_bin.2_k141_3148_290 | 328561 | 330339 | + | 4.A.3.1.1 |
| CAZyme | CokerMO_2019_SRR8692236_bin.2_k141_3148 | CokerMO_2019_SRR8692236_bin.2_k141_3148_291 | 330415 | 331836 | + | GH1 |
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_3148_282
Type: TC
Location: 316730 - 317068 (-)
Type: TC
Location: 316730 - 317068 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_3148_283
Type: TF
Location: 317283 - 318287 (-)
Type: TF
Location: 317283 - 318287 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_3148_284
Type: TC
Location: 318644 - 320419 (+)
Type: TC
Location: 318644 - 320419 (+)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_3148_285
Type: CAZyme
Location: 320486 - 321925 (+)
Type: CAZyme
Location: 320486 - 321925 (+)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_3148_286
Type: TF
Location: 322187 - 323224 (-)
Type: TF
Location: 322187 - 323224 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_3148_287
Type: CAZyme
Location: 323566 - 325008 (+)
Type: CAZyme
Location: 323566 - 325008 (+)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_3148_288
Type: TC
Location: 325184 - 326944 (+)
Type: TC
Location: 325184 - 326944 (+)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_3148_289
Type: TF
Location: 327278 - 328288 (-)
Type: TF
Location: 327278 - 328288 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_3148_290
Type: TC
Location: 328561 - 330339 (+)
Type: TC
Location: 328561 - 330339 (+)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_3148_291
Type: CAZyme
Location: 330415 - 331836 (+)
Type: CAZyme
Location: 330415 - 331836 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CokerMO_2019_SRR8692236_bin.2_k141_3148_286 | vegetarian > omnivore | 1.12349 | 0.01548 |