Cluster: CokerMO_2019_SRR8692236_bin.2_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692236_bin.2
- CGC Family ID: CGCFAM_00413
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692236_bin.2_k141_7367 | CokerMO_2019_SRR8692236_bin.2_k141_7367_142 | 190409 | 191833 | + | 4.A.1.2.3 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692236_bin.2_k141_7367 | CokerMO_2019_SRR8692236_bin.2_k141_7367_143 | 191910 | 193127 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | CokerMO_2019_SRR8692236_bin.2_k141_7367 | CokerMO_2019_SRR8692236_bin.2_k141_7367_144 | 193136 | 194047 | + | 2.A.69.4.3 |
| pfam | CokerMO_2019_SRR8692236_bin.2_k141_7367 | CokerMO_2019_SRR8692236_bin.2_k141_7367_145 | 194231 | 195742 | - | Sde182_NH-like |
| peptidase | CokerMO_2019_SRR8692236_bin.2_k141_7367 | CokerMO_2019_SRR8692236_bin.2_k141_7367_146 | 196006 | 197343 | - | S09.UPW |
| TC | CokerMO_2019_SRR8692236_bin.2_k141_7367 | CokerMO_2019_SRR8692236_bin.2_k141_7367_147 | 197834 | 199261 | + | 4.A.1.2.11 |
| CAZyme | CokerMO_2019_SRR8692236_bin.2_k141_7367 | CokerMO_2019_SRR8692236_bin.2_k141_7367_148 | 199472 | 200785 | + | GH140 |
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_7367_142
Type: TC
Location: 190409 - 191833 (+)
Type: TC
Location: 190409 - 191833 (+)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_7367_143
Type:
Location: 191910 - 193127 (+)
Type:
Location: 191910 - 193127 (+)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_7367_144
Type: TC
Location: 193136 - 194047 (+)
Type: TC
Location: 193136 - 194047 (+)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_7367_145
Type: pfam
Location: 194231 - 195742 (-)
Type: pfam
Location: 194231 - 195742 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_7367_146
Type: peptidase
Location: 196006 - 197343 (-)
Type: peptidase
Location: 196006 - 197343 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_7367_147
Type: TC
Location: 197834 - 199261 (+)
Type: TC
Location: 197834 - 199261 (+)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_7367_148
Type: CAZyme
Location: 199472 - 200785 (+)
Type: CAZyme
Location: 199472 - 200785 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.