Cluster: CokerMO_2019_SRR8692236_bin.2_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: CokerMO_2019_SRR8692236_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692236_bin.2_k141_559 | CokerMO_2019_SRR8692236_bin.2_k141_559_18 | 23722 | 24690 | - | GT2 |
| CAZyme | CokerMO_2019_SRR8692236_bin.2_k141_559 | CokerMO_2019_SRR8692236_bin.2_k141_559_19 | 24697 | 25659 | - | GT81 |
| TC | CokerMO_2019_SRR8692236_bin.2_k141_559 | CokerMO_2019_SRR8692236_bin.2_k141_559_20 | 25820 | 26665 | + | 3.A.1.103.6 |
| TC | CokerMO_2019_SRR8692236_bin.2_k141_559 | CokerMO_2019_SRR8692236_bin.2_k141_559_21 | 26677 | 27444 | + | 3.A.1.103.1 |
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_559_18
Type: CAZyme
Location: 23722 - 24690 (-)
Type: CAZyme
Location: 23722 - 24690 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_559_19
Type: CAZyme
Location: 24697 - 25659 (-)
Type: CAZyme
Location: 24697 - 25659 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_559_20
Type: TC
Location: 25820 - 26665 (+)
Type: TC
Location: 25820 - 26665 (+)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_559_21
Type: TC
Location: 26677 - 27444 (+)
Type: TC
Location: 26677 - 27444 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CokerMO_2019_SRR8692236_bin.2_k141_559_18 | vegan > omnivore | 1.09210 | 0.00701 |