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Cluster: CokerMO_2019_SRR8692231_bin.5_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC CokerMO_2019_SRR8692231_bin.5_k141_24595 CokerMO_2019_SRR8692231_bin.5_k141_24595_6 4798 6558 + 9.B.33.1.1
STP CokerMO_2019_SRR8692231_bin.5_k141_24595 CokerMO_2019_SRR8692231_bin.5_k141_24595_7 6643 7974 + SBP_bac_1
TC CokerMO_2019_SRR8692231_bin.5_k141_24595 CokerMO_2019_SRR8692231_bin.5_k141_24595_8 8038 8958 + 3.A.1.1.34
TC CokerMO_2019_SRR8692231_bin.5_k141_24595 CokerMO_2019_SRR8692231_bin.5_k141_24595_9 8955 9773 + 3.A.1.1.34
CAZyme CokerMO_2019_SRR8692231_bin.5_k141_24595 CokerMO_2019_SRR8692231_bin.5_k141_24595_10 9801 12113 + GH35
TF CokerMO_2019_SRR8692231_bin.5_k141_24595 CokerMO_2019_SRR8692231_bin.5_k141_24595_11 12205 13218 + LacI
pfam CokerMO_2019_SRR8692231_bin.5_k141_24595 CokerMO_2019_SRR8692231_bin.5_k141_24595_12 13422 14684 + SBP_bac_8
TC CokerMO_2019_SRR8692231_bin.5_k141_24595 CokerMO_2019_SRR8692231_bin.5_k141_24595_13 14721 16181 + 3.A.1.1.27
TC CokerMO_2019_SRR8692231_bin.5_k141_24595 CokerMO_2019_SRR8692231_bin.5_k141_24595_14 16178 17032 + 3.A.1.1.27
pfam CokerMO_2019_SRR8692231_bin.5_k141_24595 CokerMO_2019_SRR8692231_bin.5_k141_24595_15 17050 17826 + TraX
CAZyme CokerMO_2019_SRR8692231_bin.5_k141_24595 CokerMO_2019_SRR8692231_bin.5_k141_24595_16 17839 19863 + GH42
TC CokerMO_2019_SRR8692231_bin.5_k141_24595 CokerMO_2019_SRR8692231_bin.5_k141_24595_17 20000 20659 - 1.C.113.1.2
Gene ID: CokerMO_2019_SRR8692231_bin.5_k141_24595_6
Type: TC
Location: 4798 - 6558 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.5_k141_24595_7
Type: STP
Location: 6643 - 7974 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.5_k141_24595_8
Type: TC
Location: 8038 - 8958 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.5_k141_24595_9
Type: TC
Location: 8955 - 9773 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.5_k141_24595_10
Type: CAZyme
Location: 9801 - 12113 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.5_k141_24595_11
Type: TF
Location: 12205 - 13218 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.5_k141_24595_12
Type: pfam
Location: 13422 - 14684 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.5_k141_24595_13
Type: TC
Location: 14721 - 16181 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.5_k141_24595_14
Type: TC
Location: 16178 - 17032 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.5_k141_24595_15
Type: pfam
Location: 17050 - 17826 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.5_k141_24595_16
Type: CAZyme
Location: 17839 - 19863 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.5_k141_24595_17
Type: TC
Location: 20000 - 20659 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
CokerMO_2019_SRR8692231_bin.5_k141_24595_14 vegan > omnivore 1.21922 0.00132
CokerMO_2019_SRR8692231_bin.5_k141_24595_16 vegan > omnivore 1.25244 0.00132

🧭 Explore Read Mapping of CGC

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