Cluster: CokerMO_2019_SRR8692231_bin.27_CGC12
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692231_bin.27
- CGC Family ID: CGCFAM_00587
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692231_bin.27_k141_35012 | CokerMO_2019_SRR8692231_bin.27_k141_35012_2 | 531 | 869 | - | 2.A.7.33.5 |
| pfam | CokerMO_2019_SRR8692231_bin.27_k141_35012 | CokerMO_2019_SRR8692231_bin.27_k141_35012_3 | 1387 | 2610 | - | CPSase_L_D2 | Dala_Dala_lig_C | ATP-grasp_4 |
| CAZyme | CokerMO_2019_SRR8692231_bin.27_k141_35012 | CokerMO_2019_SRR8692231_bin.27_k141_35012_4 | 2603 | 3580 | - | GT2 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692231_bin.27_k141_35012 | CokerMO_2019_SRR8692231_bin.27_k141_35012_5 | 3733 | 4086 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | CokerMO_2019_SRR8692231_bin.27_k141_35012 | CokerMO_2019_SRR8692231_bin.27_k141_35012_6 | 4228 | 5928 | + | HTH_AraC | HTH_AraC |
| TC | CokerMO_2019_SRR8692231_bin.27_k141_35012 | CokerMO_2019_SRR8692231_bin.27_k141_35012_7 | 5949 | 7757 | + | 8.A.59.2.1 |
| pfam | CokerMO_2019_SRR8692231_bin.27_k141_35012 | CokerMO_2019_SRR8692231_bin.27_k141_35012_8 | 7754 | 8689 | + | Peripla_BP_4 |
| TC | CokerMO_2019_SRR8692231_bin.27_k141_35012 | CokerMO_2019_SRR8692231_bin.27_k141_35012_9 | 8705 | 9721 | + | 3.A.1.2.3 |
| TC | CokerMO_2019_SRR8692231_bin.27_k141_35012 | CokerMO_2019_SRR8692231_bin.27_k141_35012_10 | 9879 | 10538 | + | 3.A.1.2.3 |
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_35012_2
Type: TC
Location: 531 - 869 (-)
Type: TC
Location: 531 - 869 (-)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_35012_3
Type: pfam
Location: 1387 - 2610 (-)
Type: pfam
Location: 1387 - 2610 (-)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_35012_4
Type: CAZyme
Location: 2603 - 3580 (-)
Type: CAZyme
Location: 2603 - 3580 (-)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_35012_5
Type:
Location: 3733 - 4086 (+)
Type:
Location: 3733 - 4086 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_35012_6
Type: TF
Location: 4228 - 5928 (+)
Type: TF
Location: 4228 - 5928 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_35012_7
Type: TC
Location: 5949 - 7757 (+)
Type: TC
Location: 5949 - 7757 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_35012_8
Type: pfam
Location: 7754 - 8689 (+)
Type: pfam
Location: 7754 - 8689 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_35012_9
Type: TC
Location: 8705 - 9721 (+)
Type: TC
Location: 8705 - 9721 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_35012_10
Type: TC
Location: 9879 - 10538 (+)
Type: TC
Location: 9879 - 10538 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
JAGZHZ01
Species
JAGZHZ01 sp018366495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.