Cluster: CokerMO_2019_SRR8692231_bin.27_CGC11
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: CokerMO_2019_SRR8692231_bin.27
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692231_bin.27_k141_31775 | CokerMO_2019_SRR8692231_bin.27_k141_31775_51 | 61711 | 62379 | + | 3.A.1.124.6 |
| pfam | CokerMO_2019_SRR8692231_bin.27_k141_31775 | CokerMO_2019_SRR8692231_bin.27_k141_31775_52 | 62393 | 63046 | + | DUF5028 |
| TF | CokerMO_2019_SRR8692231_bin.27_k141_31775 | CokerMO_2019_SRR8692231_bin.27_k141_31775_53 | 63627 | 65153 | + | HTH_AraC |
| CAZyme | CokerMO_2019_SRR8692231_bin.27_k141_31775 | CokerMO_2019_SRR8692231_bin.27_k141_31775_54 | 65421 | 69989 | + | CBM51 | GH2 | GH2 |
| CAZyme | CokerMO_2019_SRR8692231_bin.27_k141_31775 | CokerMO_2019_SRR8692231_bin.27_k141_31775_55 | 70396 | 74964 | + | CBM51 | GH2 | GH2 |
| STP | CokerMO_2019_SRR8692231_bin.27_k141_31775 | CokerMO_2019_SRR8692231_bin.27_k141_31775_56 | 75214 | 80832 | + | EAL | GGDEF | GGDEF | GGDEF | PAS |
| STP | CokerMO_2019_SRR8692231_bin.27_k141_31775 | CokerMO_2019_SRR8692231_bin.27_k141_31775_57 | 81228 | 82211 | + | Peripla_BP_2 |
| TC | CokerMO_2019_SRR8692231_bin.27_k141_31775 | CokerMO_2019_SRR8692231_bin.27_k141_31775_58 | 82259 | 83287 | + | 3.A.1.14.9 |
| TC | CokerMO_2019_SRR8692231_bin.27_k141_31775 | CokerMO_2019_SRR8692231_bin.27_k141_31775_59 | 83299 | 84048 | + | 3.A.1.14.7 |
| TC | CokerMO_2019_SRR8692231_bin.27_k141_31775 | CokerMO_2019_SRR8692231_bin.27_k141_31775_60 | 84151 | 85464 | - | 2.A.40.1.1 |
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_31775_51
Type: TC
Location: 61711 - 62379 (+)
Type: TC
Location: 61711 - 62379 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_31775_52
Type: pfam
Location: 62393 - 63046 (+)
Type: pfam
Location: 62393 - 63046 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_31775_53
Type: TF
Location: 63627 - 65153 (+)
Type: TF
Location: 63627 - 65153 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_31775_54
Type: CAZyme
Location: 65421 - 69989 (+)
Type: CAZyme
Location: 65421 - 69989 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_31775_55
Type: CAZyme
Location: 70396 - 74964 (+)
Type: CAZyme
Location: 70396 - 74964 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_31775_56
Type: STP
Location: 75214 - 80832 (+)
Type: STP
Location: 75214 - 80832 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_31775_57
Type: STP
Location: 81228 - 82211 (+)
Type: STP
Location: 81228 - 82211 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_31775_58
Type: TC
Location: 82259 - 83287 (+)
Type: TC
Location: 82259 - 83287 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_31775_59
Type: TC
Location: 83299 - 84048 (+)
Type: TC
Location: 83299 - 84048 (+)
Gene ID: CokerMO_2019_SRR8692231_bin.27_k141_31775_60
Type: TC
Location: 84151 - 85464 (-)
Type: TC
Location: 84151 - 85464 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
JAGZHZ01
Species
JAGZHZ01 sp018366495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.