Cluster: CokerMO_2019_SRR8692226_bin.19_CGC6
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: CokerMO_2019_SRR8692226_bin.19
- CGC Family ID: CGCFAM_09256
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692226_bin.19_k141_7264 | CokerMO_2019_SRR8692226_bin.19_k141_7264_16 | 15961 | 16776 | + | 1.A.23.2.2 |
| CAZyme | CokerMO_2019_SRR8692226_bin.19_k141_7264 | CokerMO_2019_SRR8692226_bin.19_k141_7264_17 | 17100 | 18995 | - | GH13_39 |
| STP | CokerMO_2019_SRR8692226_bin.19_k141_7264 | CokerMO_2019_SRR8692226_bin.19_k141_7264_18 | 19084 | 19647 | - | NUDIX |
| CAZyme | CokerMO_2019_SRR8692226_bin.19_k141_7264 | CokerMO_2019_SRR8692226_bin.19_k141_7264_19 | 19911 | 21347 | + | CE4 |
| pfam | CokerMO_2019_SRR8692226_bin.19_k141_7264 | CokerMO_2019_SRR8692226_bin.19_k141_7264_20 | 21502 | 21777 | - | DUF6514 |
| CAZyme | CokerMO_2019_SRR8692226_bin.19_k141_7264 | CokerMO_2019_SRR8692226_bin.19_k141_7264_21 | 21963 | 24437 | - | GH39 |
| pfam | CokerMO_2019_SRR8692226_bin.19_k141_7264 | CokerMO_2019_SRR8692226_bin.19_k141_7264_22 | 24751 | 26430 | - | FTHFS |
| TF | CokerMO_2019_SRR8692226_bin.19_k141_7264 | CokerMO_2019_SRR8692226_bin.19_k141_7264_23 | 26837 | 27379 | - | SpoVT_AbrB |
| TC | CokerMO_2019_SRR8692226_bin.19_k141_7264 | CokerMO_2019_SRR8692226_bin.19_k141_7264_24 | 27550 | 28962 | + | 9.A.11.1.1 |
| TF | CokerMO_2019_SRR8692226_bin.19_k141_7264 | CokerMO_2019_SRR8692226_bin.19_k141_7264_25 | 28985 | 29209 | - | 0043707 |
| pfam | CokerMO_2019_SRR8692226_bin.19_k141_7264 | CokerMO_2019_SRR8692226_bin.19_k141_7264_26 | 29394 | 32837 | - | DEAD | Helicase_C | CarD_TRCF_RID | TRCF | UvrB_inter |
| TC | CokerMO_2019_SRR8692226_bin.19_k141_7264 | CokerMO_2019_SRR8692226_bin.19_k141_7264_27 | 32934 | 34094 | - | 2.A.86.1.11 |
Gene ID: CokerMO_2019_SRR8692226_bin.19_k141_7264_16
Type: TC
Location: 15961 - 16776 (+)
Type: TC
Location: 15961 - 16776 (+)
Gene ID: CokerMO_2019_SRR8692226_bin.19_k141_7264_17
Type: CAZyme
Location: 17100 - 18995 (-)
Type: CAZyme
Location: 17100 - 18995 (-)
Gene ID: CokerMO_2019_SRR8692226_bin.19_k141_7264_18
Type: STP
Location: 19084 - 19647 (-)
Type: STP
Location: 19084 - 19647 (-)
Gene ID: CokerMO_2019_SRR8692226_bin.19_k141_7264_19
Type: CAZyme
Location: 19911 - 21347 (+)
Type: CAZyme
Location: 19911 - 21347 (+)
Gene ID: CokerMO_2019_SRR8692226_bin.19_k141_7264_20
Type: pfam
Location: 21502 - 21777 (-)
Type: pfam
Location: 21502 - 21777 (-)
Gene ID: CokerMO_2019_SRR8692226_bin.19_k141_7264_21
Type: CAZyme
Location: 21963 - 24437 (-)
Type: CAZyme
Location: 21963 - 24437 (-)
Gene ID: CokerMO_2019_SRR8692226_bin.19_k141_7264_22
Type: pfam
Location: 24751 - 26430 (-)
Type: pfam
Location: 24751 - 26430 (-)
Gene ID: CokerMO_2019_SRR8692226_bin.19_k141_7264_23
Type: TF
Location: 26837 - 27379 (-)
Type: TF
Location: 26837 - 27379 (-)
Gene ID: CokerMO_2019_SRR8692226_bin.19_k141_7264_24
Type: TC
Location: 27550 - 28962 (+)
Type: TC
Location: 27550 - 28962 (+)
Gene ID: CokerMO_2019_SRR8692226_bin.19_k141_7264_25
Type: TF
Location: 28985 - 29209 (-)
Type: TF
Location: 28985 - 29209 (-)
Gene ID: CokerMO_2019_SRR8692226_bin.19_k141_7264_26
Type: pfam
Location: 29394 - 32837 (-)
Type: pfam
Location: 29394 - 32837 (-)
Gene ID: CokerMO_2019_SRR8692226_bin.19_k141_7264_27
Type: TC
Location: 32934 - 34094 (-)
Type: TC
Location: 32934 - 34094 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
JAGZMM01
Species
JAGZMM01 sp018364155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.