Cluster: CokerMO_2019_SRR8692222_bin.2_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692222_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692222_bin.2_k141_6843 | CokerMO_2019_SRR8692222_bin.2_k141_6843_86 | 85334 | 85819 | + | 4.A.1.1.13 |
| pfam | CokerMO_2019_SRR8692222_bin.2_k141_6843 | CokerMO_2019_SRR8692222_bin.2_k141_6843_87 | 85839 | 86675 | + | PRD | PRD | CAT_RBD |
| TC | CokerMO_2019_SRR8692222_bin.2_k141_6843 | CokerMO_2019_SRR8692222_bin.2_k141_6843_88 | 86851 | 88236 | + | 4.A.1.2.11 |
| pfam | CokerMO_2019_SRR8692222_bin.2_k141_6843 | CokerMO_2019_SRR8692222_bin.2_k141_6843_89 | 88294 | 89217 | + | YdjC |
| pfam | CokerMO_2019_SRR8692222_bin.2_k141_6843 | CokerMO_2019_SRR8692222_bin.2_k141_6843_90 | 89214 | 90044 | + | Lactamase_B |
| TC | CokerMO_2019_SRR8692222_bin.2_k141_6843 | CokerMO_2019_SRR8692222_bin.2_k141_6843_91 | 90084 | 91262 | + | 2.A.1.46.5 |
| pfam | CokerMO_2019_SRR8692222_bin.2_k141_6843 | CokerMO_2019_SRR8692222_bin.2_k141_6843_92 | 91710 | 92528 | - | PNP_UDP_1 |
| STP | CokerMO_2019_SRR8692222_bin.2_k141_6843 | CokerMO_2019_SRR8692222_bin.2_k141_6843_93 | 92709 | 93956 | + | HD |
| TC | CokerMO_2019_SRR8692222_bin.2_k141_6843 | CokerMO_2019_SRR8692222_bin.2_k141_6843_94 | 93965 | 95857 | - | 4.A.2.1.4 |
| STP | CokerMO_2019_SRR8692222_bin.2_k141_6843 | CokerMO_2019_SRR8692222_bin.2_k141_6843_95 | 95857 | 96777 | - | PfkB |
| TF | CokerMO_2019_SRR8692222_bin.2_k141_6843 | CokerMO_2019_SRR8692222_bin.2_k141_6843_96 | 96774 | 97523 | - | HTH_DeoR |
| CAZyme | CokerMO_2019_SRR8692222_bin.2_k141_6843 | CokerMO_2019_SRR8692222_bin.2_k141_6843_97 | 97671 | 99590 | - | GT51 |
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_6843_86
Type: TC
Location: 85334 - 85819 (+)
Type: TC
Location: 85334 - 85819 (+)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_6843_87
Type: pfam
Location: 85839 - 86675 (+)
Type: pfam
Location: 85839 - 86675 (+)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_6843_88
Type: TC
Location: 86851 - 88236 (+)
Type: TC
Location: 86851 - 88236 (+)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_6843_89
Type: pfam
Location: 88294 - 89217 (+)
Type: pfam
Location: 88294 - 89217 (+)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_6843_90
Type: pfam
Location: 89214 - 90044 (+)
Type: pfam
Location: 89214 - 90044 (+)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_6843_91
Type: TC
Location: 90084 - 91262 (+)
Type: TC
Location: 90084 - 91262 (+)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_6843_92
Type: pfam
Location: 91710 - 92528 (-)
Type: pfam
Location: 91710 - 92528 (-)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_6843_93
Type: STP
Location: 92709 - 93956 (+)
Type: STP
Location: 92709 - 93956 (+)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_6843_94
Type: TC
Location: 93965 - 95857 (-)
Type: TC
Location: 93965 - 95857 (-)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_6843_95
Type: STP
Location: 95857 - 96777 (-)
Type: STP
Location: 95857 - 96777 (-)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_6843_96
Type: TF
Location: 96774 - 97523 (-)
Type: TF
Location: 96774 - 97523 (-)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_6843_97
Type: CAZyme
Location: 97671 - 99590 (-)
Type: CAZyme
Location: 97671 - 99590 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Beduini
Species
Beduini sp027676805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.