Cluster: CokerMO_2019_SRR8692222_bin.2_CGC10
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: CokerMO_2019_SRR8692222_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692222_bin.2_k141_13466 | CokerMO_2019_SRR8692222_bin.2_k141_13466_5 | 4699 | 6069 | - | GH77 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692222_bin.2_k141_13466 | CokerMO_2019_SRR8692222_bin.2_k141_13466_6 | 6179 | 6577 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692222_bin.2_k141_13466 | CokerMO_2019_SRR8692222_bin.2_k141_13466_7 | 6587 | 6853 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | CokerMO_2019_SRR8692222_bin.2_k141_13466 | CokerMO_2019_SRR8692222_bin.2_k141_13466_8 | 7024 | 8451 | + | GH1 |
| CAZyme | CokerMO_2019_SRR8692222_bin.2_k141_13466 | CokerMO_2019_SRR8692222_bin.2_k141_13466_9 | 8509 | 10527 | - | GH42 |
| STP | CokerMO_2019_SRR8692222_bin.2_k141_13466 | CokerMO_2019_SRR8692222_bin.2_k141_13466_10 | 10631 | 11539 | - | HATPase_c | HisKA |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692222_bin.2_k141_13466 | CokerMO_2019_SRR8692222_bin.2_k141_13466_11 | 11556 | 12344 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | CokerMO_2019_SRR8692222_bin.2_k141_13466 | CokerMO_2019_SRR8692222_bin.2_k141_13466_12 | 12337 | 13248 | - | 3.A.1.131.1 |
| TF | CokerMO_2019_SRR8692222_bin.2_k141_13466 | CokerMO_2019_SRR8692222_bin.2_k141_13466_13 | 13327 | 13998 | - | Trans_reg_C |
| CAZyme | CokerMO_2019_SRR8692222_bin.2_k141_13466 | CokerMO_2019_SRR8692222_bin.2_k141_13466_14 | 14089 | 15957 | - | GH129 |
| peptidase | CokerMO_2019_SRR8692222_bin.2_k141_13466 | CokerMO_2019_SRR8692222_bin.2_k141_13466_15 | 15947 | 17710 | - | M03.UPB |
| pfam | CokerMO_2019_SRR8692222_bin.2_k141_13466 | CokerMO_2019_SRR8692222_bin.2_k141_13466_16 | 17792 | 18718 | - | SBF | Mem_trans |
| TC | CokerMO_2019_SRR8692222_bin.2_k141_13466 | CokerMO_2019_SRR8692222_bin.2_k141_13466_17 | 19199 | 20152 | - | 2.A.19.5.2 |
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_13466_5
Type: CAZyme
Location: 4699 - 6069 (-)
Type: CAZyme
Location: 4699 - 6069 (-)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_13466_6
Type:
Location: 6179 - 6577 (-)
Type:
Location: 6179 - 6577 (-)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_13466_7
Type:
Location: 6587 - 6853 (-)
Type:
Location: 6587 - 6853 (-)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_13466_8
Type: CAZyme
Location: 7024 - 8451 (+)
Type: CAZyme
Location: 7024 - 8451 (+)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_13466_9
Type: CAZyme
Location: 8509 - 10527 (-)
Type: CAZyme
Location: 8509 - 10527 (-)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_13466_10
Type: STP
Location: 10631 - 11539 (-)
Type: STP
Location: 10631 - 11539 (-)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_13466_11
Type:
Location: 11556 - 12344 (-)
Type:
Location: 11556 - 12344 (-)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_13466_12
Type: TC
Location: 12337 - 13248 (-)
Type: TC
Location: 12337 - 13248 (-)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_13466_13
Type: TF
Location: 13327 - 13998 (-)
Type: TF
Location: 13327 - 13998 (-)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_13466_14
Type: CAZyme
Location: 14089 - 15957 (-)
Type: CAZyme
Location: 14089 - 15957 (-)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_13466_15
Type: peptidase
Location: 15947 - 17710 (-)
Type: peptidase
Location: 15947 - 17710 (-)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_13466_16
Type: pfam
Location: 17792 - 18718 (-)
Type: pfam
Location: 17792 - 18718 (-)
Gene ID: CokerMO_2019_SRR8692222_bin.2_k141_13466_17
Type: TC
Location: 19199 - 20152 (-)
Type: TC
Location: 19199 - 20152 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Beduini
Species
Beduini sp027676805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.